Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02277 ATGTCAATGGAAATGATGGCAAATGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCACTCTTGCGGTTAGTGTTCCATGCAGCAGCTTGCTGACTATAGTGACAGTTAGATGCGGGCATTGTGCTAATTTGCTTTCAGTTAACATGGGAGCATCACTTCAATCTTTTCCACCTCAACAAGATCACCCTCAGAAACAGCAACTCTTAAGCTGTCATCAAGAAACAAGCAGAAGGGAAGTAGGATCATCATCTTCAAAATGCAAAGCGTTTGAGACAGTAGCTCATGAGCAACCTAGAACTCCTCCCATTCGCCCTCCGGAGAAGAGACAACGTGTTCCTTCTGCTTATAATCGGTTCATTAAGGAGGAAATACAAAGAATTAAGGCTAGTAATCCAGATATCAGCCATAGAGAAGCATTCAGCACAGCAGCCAAAAACTGGGCACATTTTCCTCACATTCACTTTGGGTTAAAGTTGGATGGAAGCAAACAAGCAAAGTTGGACCATGGGGTTGGGGACGCTACTCAAAAGTCTAATGGATTCTATTGA 555 0.4306 MSMEMMANERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQSFPPQQDHPQKQQLLSCHQETSRREVGSSSSKCKAFETVAHEQPRTPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGSKQAKLDHGVGDATQKSNGFY 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02277 184 Pfam YABBY protein 7 159 IPR006780 GO:0007275
Car01g02277 184 Gene3D High mobility group box domain 96 155 IPR036910 -
Car01g02277 184 SUPERFAMILY HMG-box 99 152 IPR036910 -
Car01g02277 184 MobiDBLite consensus disorder prediction 94 114 - -
Car01g02277 184 PANTHER PROTEIN YABBY 6-RELATED 3 184 IPR006780 GO:0007275
Car01g02277 184 PANTHER AXIAL REGULATOR YABBY 2-RELATED 3 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02277 Car-Chr1 48535615 48542102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02277 1 184 C2C2-YABBY Transcription Factor Family AT1G08465 65.263 1.54e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Car01g02277 YABBY 6.9e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02277 K25796 - gmx:100785458 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02277 01 48535615 48542102 Car06g03294 06 61662126 61667963 PCT