Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02268 ATGGATGAAATAATTGATGTTCCTACTCATTTCCTATGCNNNNNNNNNNCCCTACAACTTATGAAAGACCCTGTTACTGTCACAACAGGAATCACCTACGACAGAGACAACATAGAAAAATGGTTATTTTCATTCAAAAACAAAACTTGTCCTGTTACAAAACAACACATTGATCTTAATCTTACACCAAATATCACTCTACGCCGTTTGATTCAATCTTGGTGCACCCTTAATTCATCACTTGGTATTCAACGAATTccaacaccaaaatcaccaatagacaaaacccaaatcctcaaaCTTTTCTCTGAAGCCAAAAAATCCCCAGAAAAACAACTCAATTGTCTCTTAAAAATTCGTTCTTTTGTCTTTGAAAGTCAAAGAAACAAAAACTGTTTAGAATCCGCAGGAACAATAGAGTTCTTAGCTTCAACCATGAAAAACAATTCAATTTCTGTGATTGAATCAGCTATTGAAATTTTATTCCATTTATACCCTTCTGAACAACACATTAAGAATCTGGTAAAAAATGAAACAATTCAATTCATTGAGTCATTGTTTCATGTGTTGAAAAATGGAAACTACCAATCAAGAGCTTATGCAACAATGCTATTGAAATCAGCATTTGAAGTAGCTGATCCAATCCAATTAATCAGTGTCAAAAAAGCACTTTTTGAAGAAATAACAAGAGTTTTAACTGATAAGATTTCACAACAAGCTTCAAAAGCTGCATTGAAGTTAATAGTGGAGCTTTTACCATGGGGAAGAAACCGAATAAAAGCGGTCGAAGGCGGGGCGGTATTAGTCCTCATCGAGCTTCTTATCGATGTTTCCGAGAGACGGGCATGCGAGTTAATGTTAATAGGTTTGGATCAACTTTGTGGTTGTGCAGAAGGTCGTGCAGAATTGTTGAATCATGGTGCTGGTGTTGCTATTGTGTCAAAGAAAATTTTGAGGGTTTCTCATGTTGCAAGTGATAGAGGGATTAGAATTTTGAATTCTGTTTGTAGGTATTCTGCAAATTCTAGAGTTTTGAATGAGATGTTGCAAGTTGGTGGTGTTTCAAAGTTGTGTTTGGTGCTTCAAGTTGATAGTAGTTTTAAGACTAAAGAGAGGGCTAAGGAGATTCTCAAATTGCATTCTGGTGTTTGGAAGAATTCTAGGTGTATTCCTGTTTCTTTGTTGTCTTCATATCCATGA 1200 0.3408 MDEIIDVPTHFLCXXXXLQLMKDPVTVTTGITYDRDNIEKWLFSFKNKTCPVTKQHIDLNLTPNITLRRLIQSWCTLNSSLGIQRIPTPKSPIDKTQILKLFSEAKKSPEKQLNCLLKIRSFVFESQRNKNCLESAGTIEFLASTMKNNSISVIESAIEILFHLYPSEQHIKNLVKNETIQFIESLFHVLKNGNYQSRAYATMLLKSAFEVADPIQLISVKKALFEEITRVLTDKISQQASKAALKLIVELLPWGRNRIKAVEGGAVLVLIELLIDVSERRACELMLIGLDQLCGCAEGRAELLNHGAGVAIVSKKILRVSHVASDRGIRILNSVCRYSANSRVLNEMLQVGGVSKLCLVLQVDSSFKTKERAKEILKLHSGVWKNSRCIPVSLLSSYP 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02268 399 PANTHER WDSAM1 PROTEIN 6 399 IPR045185 GO:0061630
Car01g02268 399 Pfam U-box domain 7 78 IPR003613 GO:0004842|GO:0016567
Car01g02268 399 PANTHER OS11G0573500 PROTEIN 6 399 - -
Car01g02268 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 84 IPR013083 -
Car01g02268 399 Gene3D - 96 382 IPR011989 -
Car01g02268 399 SMART Ubox_2 10 74 IPR003613 GO:0004842|GO:0016567
Car01g02268 399 SUPERFAMILY RING/U-box 4 81 - -
Car01g02268 399 CDD RING-Ubox_PUB 11 55 IPR045210 -
Car01g02268 399 SUPERFAMILY ARM repeat 99 377 IPR016024 -
Car01g02268 399 ProSiteProfiles U-box domain profile. 6 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02268 Car-Chr1 48427854 48429273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02268 1 399 U-box Gene Family AT2G35930 53.941 4.80e-153 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02268 - - gmx:100778012 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02268 01 48427854 48429273 Car01g02268 01 48427854 48429273 ECH