Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02263 ATGTTAGGTTACTTACTTTGTTCTAGGGCAACAATGGGAGTTAAGTTGATAGAACAAGTTTCCAAGTTGATATTTTTTTGTCTAATCATTACAATATGTAATGGTTCTACAGACCCTAATGATCTACAAGTTTTGAATGATTTTAGAAAAGGGTTGGAAAATCCAGAGCTATTGAAATGGCCAAAAGAAGGAGATGATGATCCATGTGGTCCTCCATTATGGCCTTATGTGTTCTGTTCTGAAGGTAGAGTCACTCAGATTCAAGCCAAGAATCTTGGTCTTAGAGGAATACTACCTCAAAACTTTAACCAACTCACAGAACTCAACAATTTAGGTCTTCAAAGGAACAATCTCAGTGGAATGTTACCAAGTTTTAGTGGTTTATCTAAATTGGAATTTGCTTTCTTGGATTACAATTCATTTGATGCTATCCCTTTTGATTTCTTCAATGGATTAACAAGCCTTAGGGTTTTGTCATTGGAAGAAAATCCATTGAATGTTAGTACTAATGGTTGGTCATTTCCTTTGGATTTGGAAAAATCGACGCAGTTAACTAATCTTTCATTTGTTGATTGTAATTTGGTTGGAACATTGCCTGATTTTCTAGGCACATTGCCATCTCTCACAAGTTTAAGGCTTTCTGGGAACAAACTCTCCGGTAGCGTTCCGAGTACTTTTGCGCAATCTTCAATTCAGGTTTTGTGGTTGAATAATCAAGAACAAGGTGGTTTCACAGGTACTATTGATGTTATTGCTTCAATGGTTTTCTTAACACAACTTTGGCTACATGGAAACATGTTCTCAGGGACAATTCCAGAGAATATTGGAAACCTAACTTCCTTGAAGGAACTCAACCTTAACAGTAATCAATTTGTTGGGTTGATTCCGCAATCTTTAGCAGAAATGAACCTTGAATCACTTGTTCTTAATAATAACATGTTAATGGGTCCAATACCAAAGTTTAAAGCTGCAAACTTTTCTTATGATGACAATCTCTTTTGTCAAACTAAGCCTGGACTTGAATGTGACCCTGAAGTTAATGCATTATTGGATTTTCTGAATAATCTGAATTATCCATCATTTCTGATTTCTGATTGGTCAGGTAATAAACCATGCACAAGTAGCACAGGACCATGGTTTGGATTAAACTGCAATTCAAACTCTGAGGTAACTATAATCAATCTACCAAAACATAAGTTAAATGGTACTTTAAGTCCTTCACTTGCTAAGTTAGATTCACTTCATGAAATTAGGCTTGCTGAAAATAATATAACTGGCATAGTTCCTGATGATTATACTAAGTTGAAATCTTTGAGGTTATTGGATTTAAGTGACAATAATCTTGAATCTCCTTTGCCAAATTTTCATGGTGTGAAAGTTATTACTGTCGGCAACCTTTTTCTTAGTAATCAAACTGGAGAGAGTGCGAGTCCTATTAGCAGCCCGAATTCGACATACAATCCTTCAAATGCTCCAACCTCACCTAAGCAGATAGTTTCAAGCTCAAATCACAAAAGACTTGATACAGTGGCTGGAGTATCAGTGTCTGCAGTTGTAGCTTTTTTGGTTGTTTATCTCTTTTTATGTTTCTTTAAGAACAAGAAAACCTCCTTGGATGCTTCGAGTTCCATTGTGGTTCACCCTCGCGATCCATCTGATCGAGACAATGTAGTTAAAATTGCGGTTTCAAGCAACAACATCGGAAGCTTATCAGGAAAGACTGGAACGAGTTTTTTTAGTAACATAAGCGGTGAAACTCAAAACTCTTACCTAATTGAGGCTGGTAACCATGTCATATCCGTGCAAGTACTACGCAAGGTTACTGATAATTTTGCATCGGAAAATGAACTAGGCCGCGGTGGATTTGGAACTGTTTATAAAGGGGAATTAGAAGATGGAACCAAAATAGCAGTGAAGAGAATGGAGCATGGAGCTATTGGCAATAAGGCAGTGGAAGAATTTCAATCTGAAATAGCTGTTCTTTCTAAGGTTCGGCACAGGCATCTGGTATCTCTTTTGGGGTATTCCATTGAAGGAAATGAAAGACTTTTAGTTTATGAGTTTATGCCACTTGGTGCTCTAAGTCAGCATCTTTTTCATTGGAAAAAATTGGAGTTAAAGCCTTTGAGTTGGTCACAAAGGCTTTCAATAGCACTAGATGTTGCTAGAGGGATGGAATATCTTCATGGTCTTGCCCGCGAGACCTTTATTCATAGAGATCTCAAGTCTTCTAATATTCTACTAGGCGATGATTTTCGCGCAAAAGTTTCAGATTTTGGCCTTGTGAAGCTTGCGCCGGATGGTGAAAAATCTGTAGCAACCAAGCTTGCTGGGACTTTTGGTTACCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACCACAAAAGTTGATGTGTTCAGCTACGGAGTTGTGTTAATAGAACTTCTAACTGGACTAACGGCACTTGACGAGAGCCGGTCAGAGGAAATCCGATACTTGGCTGAATGGTTTTGGCGAGTAAAATCAAACAAAGAAAAGCTTATGGCTGCGATAGATCCAGCTTTCGAACAAAGTGAAGAAACATATGAGAGTATAACTATTGTATCAGAACTTGCAGGACATTGCACTGCTAGGGAAGCATACCATAGGCCAGATATGAGTCATGCAGTCAATGTACTATCAGCGTTAGTCGAGAAATGGCGACCAGTCGACGACGAATTGGATCAATATTCTGTGATTGACTACAATCGACCACTTCCTCAAATGTTGAAAATTTGGAAGGATGCAGAAAGCAATGAGTCTAGCTATAGTAATGCTGCTAGTCTTGAAGACAGTAAGGGAAGTATTCCAGTGAGGCCTACTGGATTTGCTGACTCTTTTACTTCTGCTGATGCTAGATGA 2883 0.3836 MLGYLLCSRATMGVKLIEQVSKLIFFCLIITICNGSTDPNDLQVLNDFRKGLENPELLKWPKEGDDDPCGPPLWPYVFCSEGRVTQIQAKNLGLRGILPQNFNQLTELNNLGLQRNNLSGMLPSFSGLSKLEFAFLDYNSFDAIPFDFFNGLTSLRVLSLEENPLNVSTNGWSFPLDLEKSTQLTNLSFVDCNLVGTLPDFLGTLPSLTSLRLSGNKLSGSVPSTFAQSSIQVLWLNNQEQGGFTGTIDVIASMVFLTQLWLHGNMFSGTIPENIGNLTSLKELNLNSNQFVGLIPQSLAEMNLESLVLNNNMLMGPIPKFKAANFSYDDNLFCQTKPGLECDPEVNALLDFLNNLNYPSFLISDWSGNKPCTSSTGPWFGLNCNSNSEVTIINLPKHKLNGTLSPSLAKLDSLHEIRLAENNITGIVPDDYTKLKSLRLLDLSDNNLESPLPNFHGVKVITVGNLFLSNQTGESASPISSPNSTYNPSNAPTSPKQIVSSSNHKRLDTVAGVSVSAVVAFLVVYLFLCFFKNKKTSLDASSSIVVHPRDPSDRDNVVKIAVSSNNIGSLSGKTGTSFFSNISGETQNSYLIEAGNHVISVQVLRKVTDNFASENELGRGGFGTVYKGELEDGTKIAVKRMEHGAIGNKAVEEFQSEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEFMPLGALSQHLFHWKKLELKPLSWSQRLSIALDVARGMEYLHGLARETFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGEKSVATKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLIELLTGLTALDESRSEEIRYLAEWFWRVKSNKEKLMAAIDPAFEQSEETYESITIVSELAGHCTAREAYHRPDMSHAVNVLSALVEKWRPVDDELDQYSVIDYNRPLPQMLKIWKDAESNESSYSNAASLEDSKGSIPVRPTGFADSFTSADAR 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02263 960 Pfam Leucine rich repeat N-terminal domain 39 80 IPR013210 -
Car01g02263 960 Pfam Leucine rich repeat N-terminal domain 343 385 IPR013210 -
Car01g02263 960 SUPERFAMILY L domain-like 37 321 - -
Car01g02263 960 MobiDBLite consensus disorder prediction 930 960 - -
Car01g02263 960 Gene3D Ribonuclease Inhibitor 39 339 IPR032675 -
Car01g02263 960 PANTHER OSJNBA0070M12.3 PROTEIN 20 960 - -
Car01g02263 960 Pfam Protein tyrosine and serine/threonine kinase 614 885 IPR001245 GO:0004672|GO:0006468
Car01g02263 960 ProSitePatterns Serine/Threonine protein kinases active-site signature. 736 748 IPR008271 GO:0004672|GO:0006468
Car01g02263 960 SUPERFAMILY Protein kinase-like (PK-like) 597 918 IPR011009 -
Car01g02263 960 SMART LRR_typ_2 128 151 IPR003591 -
Car01g02263 960 SMART LRR_typ_2 105 127 IPR003591 -
Car01g02263 960 SMART LRR_typ_2 152 175 IPR003591 -
Car01g02263 960 SMART LRR_typ_2 205 228 IPR003591 -
Car01g02263 960 SMART LRR_typ_2 278 301 IPR003591 -
Car01g02263 960 SMART LRR_typ_2 435 457 IPR003591 -
Car01g02263 960 SMART LRR_typ_2 411 434 IPR003591 -
Car01g02263 960 SUPERFAMILY L domain-like 345 455 - -
Car01g02263 960 ProSitePatterns Protein kinases ATP-binding region signature. 617 639 IPR017441 GO:0005524
Car01g02263 960 ProSiteProfiles Protein kinase domain profile. 611 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02263 960 ProSiteProfiles Leucine-rich repeat profile. 437 459 IPR001611 GO:0005515
Car01g02263 960 Gene3D Phosphorylase Kinase; domain 1 576 688 - -
Car01g02263 960 CDD STKc_IRAK 617 887 - -
Car01g02263 960 SMART serkin_6 611 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02263 960 MobiDBLite consensus disorder prediction 474 500 - -
Car01g02263 960 Gene3D Transferase(Phosphotransferase) domain 1 689 908 - -
Car01g02263 960 Gene3D Ribonuclease Inhibitor 344 469 IPR032675 -
Car01g02263 960 PANTHER OSJNBA0070M12.3 PROTEIN 20 960 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02263 Car-Chr1 48381192 48385446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02263 96 906 Receptor kinase-like Gene Family AT1G55610 29.425 7.86e-79 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Car01g02263 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02263 - - cam:101493565 1867.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02263 01 48381192 48385446 Car01g02263 01 48381192 48385446 ECH