Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02256 ATGTCTTTCAACTTCATCAAGAAAAGGTTCATGAAGAAATTCTTCAAATCTAACAAAAGAGTTGGTTGTAACAAACTAAAACCCTCTAATGTGCTTCAACCAACCCTAAAACACAAAATCTCTATTTACAAAAATAGAAACCCTAGCAGCCTCAACTACGAAGATTTCACTTCCACCACCATCTCGGAACCCAAAACTACTCATCACGACGACTACAACAATAATTGTATTCTAAAACATAGTACCAAACTCATCGATAGCATTGCCGTTGAGAAGGACTCACAAGACCCTCGTGAAGATTTTCGAAACTCAATACTTCAAATGATATTGGAGAGAAAGATCTACTCAGAAGAAGATCTTGAAGAACTTCTTGAATGTTTTCTTCAGCTTAATGCAAATTGTCACCACCAAATAATTGTTCAATCCTTCATGGAGATTTGTGAAGAAATCTTTCCTAAGAAGACGTGA 468 0.359 MSFNFIKKRFMKKFFKSNKRVGCNKLKPSNVLQPTLKHKISIYKNRNPSSLNYEDFTSTTISEPKTTHHDDYNNNCILKHSTKLIDSIAVEKDSQDPREDFRNSILQMILERKIYSEEDLEELLECFLQLNANCHHQIIVQSFMEICEEIFPKKT 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02256 155 ProSiteProfiles OVATE domain profile. 90 149 IPR006458 -
Car01g02256 155 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 5 154 - -
Car01g02256 155 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 5 154 IPR038933 GO:0045892
Car01g02256 155 Pfam Transcriptional repressor, ovate 94 151 IPR006458 -
Car01g02256 155 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 88 149 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02256 Car-Chr1 48335555 48336443 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Car01g02256 Ovate 8.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02256 - - mtr:MTR_5g079710 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02256 01 48335555 48336443 Car06g03321 06 62290654 62291839 PCT