Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02252 ATGGAAATGGTTTCCAAGGAAGCTCAGATGTCTATTGCTGCTTCCTCTATGTTTCCTGGTTTCAGATTCTGTCCCACCGATGAAGAGTTGATTTCTTATTATCTTAGGAAGAAATTGGATGGTCACGAAGAGAGTGTTCAAGTTATTTCTGAGGTTGAGCTTTGTAAATATGAACCTTGGGATTTACCAGCCAAATCATTCATTCAATCAGATAACGAGTGGTTCTTCTTCTCATCGCGTGGAAGAAAGTATCCAAACGGTTCACAAAGTAAAAGAGCTACTGATTGTGGCTACTGGAAAGCTACCGGAAAAGAGCGCAACGTGAAATCGGGTTCAAACGTCATAGGGACGAAGCGAACTTTGGTGTTTCACTTAGGTCGTGCACCTAAAGGCGAAAGGACAGAATGGATAATGCACGAGTACTGCATCAGTGACAGGTCTCCGGATTCTTTGGTTGTTTGTCGCCTCAAGAAGAACACAGAGTTTCGTCAGAACGATGCTTCCAATAGAGCCTCATCAAGTCATATGAATGCAGTTAATTCACATGAAAGTGATTGTGCTGCTTCAGAAGGTGGTATTGATCAAAGGGGTGTCTGTGAACAAGACAAGGAGGTTGATGGTAGCTCCAAGCGTGGCAGCAGCAGTTATGGTTCTCCTTCAATGGAACAAATTGATTCCGTGTCTGAATCAAATCAGCGACCAGCTAATGACACTACTTTGACAGAATCTTCCGGCCACCTAAAGATGGATGAAGAGGATTGTTATGCAGAGATACTAAAGAATGATATCATAAAATTAGATGAATCATCAATGTCTCAAGGGGCTCAAACAAGACCACCTGACCCTGCCAATTCTCAACCCTGCCAAGGCACTGCGCAACGAAGAATACGATTAAGGGTTGAGAAATCGACGCATTCTCAACCTGGAGTTCGTTTCTCAAGAACAATGCATCAGTCCAAGAGTAGCTCCTTTGCCAGAATGACCAACCATTTGATGATATTTGCTTTCTTTGTTATTGCTCTGATGGTTTTATTTTTTTGGTCTTTATTGGGTGGTCACAAACAAATGAAATATTGTGTGAAAATATTGGGTGGAAAACATTGCTTTGCTTTGCAGCTTTGGGTTACTATCCACGTCGTCACTTTCACCTCCCAACACCAGGAAAAACCCAACCGATTCTCCAAACTTTCGAAATCAGCGCGTGCGTTGGCCGCGCGTCACTCTCtccatttccatatccgagtttccaaaatcactttctcatttccCCCTAACCTCTCCCTCAGAGGAAAGAGGGGGAACTCAAACTCCTCACAGATCGATCATGAATTTAGCAAGTTTTCTCCTCCACACCAATTCGTAATAGTCATGTCGAGGCCTATGTTGCTTGTTTTCTTGTTGATTATACTTATAATCACTTCCCAGTTTGAGTGGAAGCAACAGCTTGTGGCCGATGTTGAATTGAATCCCGCTGTATCTCAAAAGCAGCATCATATTTCTACGGCTGAAGAAACCGTTAAGGAGAAGATTATTTTAGTGCAAGAGAAGAATATCCGAAGACTGAATGAGCTTGTGCGGCATCTTCAGGAACAACTGCAGCAGTGTAAAGGAAGCAATGGAACTATAAATAGTACTGTAGGCCCTCTAACTGAGCGGATTCTTGAGCTTGAGCGGCAACAAATTTTAGAGGATTAA 1695 0.4177 MEMVSKEAQMSIAASSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVELCKYEPWDLPAKSFIQSDNEWFFFSSRGRKYPNGSQSKRATDCGYWKATGKERNVKSGSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCISDRSPDSLVVCRLKKNTEFRQNDASNRASSSHMNAVNSHESDCAASEGGIDQRGVCEQDKEVDGSSKRGSSSYGSPSMEQIDSVSESNQRPANDTTLTESSGHLKMDEEDCYAEILKNDIIKLDESSMSQGAQTRPPDPANSQPCQGTAQRRIRLRVEKSTHSQPGVRFSRTMHQSKSSSFARMTNHLMIFAFFVIALMVLFFWSLLGGHKQMKYCVKILGGKHCFALQLWVTIHVVTFTSQHQEKPNRFSKLSKSARALAARHSLHFHIRVSKITFSFPPNLSLRGKRGNSNSSQIDHEFSKFSPPHQFVIVMSRPMLLVFLLIILIITSQFEWKQQLVADVELNPAVSQKQHHISTAEETVKEKIILVQEKNIRRLNELVRHLQEQLQQCKGSNGTINSTVGPLTERILELERQQILED 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02252 564 MobiDBLite consensus disorder prediction 270 294 - -
Car01g02252 564 PANTHER NAC DOMAIN-CONTAINING PROTEIN 89 11 357 - -
Car01g02252 564 Coils Coil 511 538 - -
Car01g02252 564 Gene3D NAC domain 26 163 IPR036093 GO:0003677|GO:0006355
Car01g02252 564 MobiDBLite consensus disorder prediction 165 184 - -
Car01g02252 564 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 11 357 - -
Car01g02252 564 MobiDBLite consensus disorder prediction 165 247 - -
Car01g02252 564 ProSiteProfiles NAC domain profile. 17 159 IPR003441 GO:0003677|GO:0006355
Car01g02252 564 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Car01g02252 564 Pfam No apical meristem (NAM) protein 19 142 IPR003441 GO:0003677|GO:0006355
Car01g02252 564 MobiDBLite consensus disorder prediction 270 292 - -
Car01g02252 564 MobiDBLite consensus disorder prediction 210 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02252 Car-Chr1 48286926 48294185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02252 4 350 NAC Transcription Factor Family AT2G27300 45.205 1.99e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car01g02252 NAM 4.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02252 - - mtr:MTR_2g086880 818.92