Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02231 ATGTATCATCAACATCATCACCAACACCAAGGAAAAAATATTCATTCTTCTTCTAGAATGTCAATACCATCTGAGAGACACATGTTCCTTCAAACAGGAAATGGTTCTAGTGATTCAGGACTTGTGCTGTCAACTGATGCTAAGCCTAGATTAAAATGGACACCTGATCTTCATGCAAGGTTTATAGAAGCAGTTAATCAGTTAGGTGGAGCTGACAAGGCAACTCCAAAAACAGTAATGAAACTCATGGGGATTCCAGGACTTACCTTATATCATCTAAAGAGCCATCTTCAGAAGTACAGATTGAGCAAGAATCTGCATGGACAAAGCAACAATAATAATGTGACACATAAAATCACAGACACACATGCAACTTCAGGAACTGATGAGAGATCACTTTCTGAAACCAATGGAACTCACATGAATAAATTAATAACCCTTGGACCACAGACTAATAACAAAGATATACACATAAGTGAGGCGCTGCAGATGCAGATTGAGGTTCAGAGAAGACTCAATGAACAACTTGAGGTACAAAGACACTTGCAGCTTAGGATAGAAGCTCAAGGAAAATACCTTCAATCAGTACTTGAGAAAGCTCAAGAAACACTTGGTAGACAGAATTTGGGAATAGTAGGACTTGAAGCTGCAAAAGTTCAACTTTCAGAGCTTGTTTCAAAAGTATCCTCACAGTCTCTAAATTCAGCATTTTCAGAGATGAAGGAGTTACAAGGATTTAATAACCCTCAACAACAAACACAAATTACAACAAACCAACCAAATGATTGCTCAATGGACAGTAGTTGCTTAACATCGTCGGACCGATCACAAAAAGAACAACAAGAGATCATTCAAAATGGAGGAGGGTTTGGATTAAGACACTTCAACAACAACAACAACCATTTGTTCATGGAAAGAAAAGAATTACAACAAGTCACAGAAACAAACATTAGAAACAGTGAAGTACTAAAGTGGTGTAGTGATGAAGTGAAAAAAAACACAAGTACTAATTTTCATGGAAACTTATCAATGAGCATTGGAGTTGAAAGTCATTCAGATGGTGAGTTTCAACGTACATCAAGAACAGATCAAACAATGAAATTAGCAATGGATGATCATAAGATGCAACCTTCAAATAGTTACTTTTCAACTTCAAGATTGGATTTAAACAGTCGTGGAGATAATAATGAAGGATGTAAACAACTTGACTTGAATAGGTTCAGTTGGAACTGA 1233 0.3666 MYHQHHHQHQGKNIHSSSRMSIPSERHMFLQTGNGSSDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNNNVTHKITDTHATSGTDERSLSETNGTHMNKLITLGPQTNNKDIHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVSSQSLNSAFSEMKELQGFNNPQQQTQITTNQPNDCSMDSSCLTSSDRSQKEQQEIIQNGGGFGLRHFNNNNNHLFMERKELQQVTETNIRNSEVLKWCSDEVKKNTSTNFHGNLSMSIGVESHSDGEFQRTSRTDQTMKLAMDDHKMQPSNSYFSTSRLDLNSRGDNNEGCKQLDLNRFSWN 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02231 410 Pfam MYB-CC type transfactor, LHEQLE motif 156 203 IPR025756 -
Car01g02231 410 Gene3D - 47 105 - -
Car01g02231 410 Pfam Myb-like DNA-binding domain 50 101 IPR001005 -
Car01g02231 410 PANTHER MYB-RELATED PROTEIN 2 6 410 - -
Car01g02231 410 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 6 410 IPR044848 GO:0003700
Car01g02231 410 Coils Coil 159 179 - -
Car01g02231 410 MobiDBLite consensus disorder prediction 246 279 - -
Car01g02231 410 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Car01g02231 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 105 IPR017930 -
Car01g02231 410 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 48 103 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02231 Car-Chr1 48152010 48154298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02231 80 410 G2-like Transcription Factor Family AT3G04030 48.688 1.60e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Car01g02231 Myb_DNA-binding 3.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02231 - - gmx:100810396 517.694