Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02230 ATGGCGAGTCAAAGAATTGGAGAGCTTGATTTTTCTGAACCTTATGGAATTCATCATAGGATTAACAATCCTTCATCAAGTTTAATCAATGATCAAGGATCTGGATTTGATTTTGGGGAGCTAGAAGAAGCAATTGGTCTGCAAGGAGTTAAGATTAGAAATGATGAAACAAAAGCATCTTTTTTCACAGGCAAACCTGCAGCTACACTGGAAATGTTCCCTTCTTGGCCAATGAGATTCCATCAATCCTCAATAGGAGGTACTAATAACAAATCAGGGGGTGAAAGCAGTGATTCAGCACTTTCAAGCAAAAATGAGAACCCTTTTGAGCCAGAATCACCCTTAAGTAAAAAAGCATCTTCTTTTTGTTCTTCAGATCAATTACAACATCTGCAACTACAACAAGATATGACAAATAATAATGATGTTATTAAAACAGCTTCTTCACCAAAATCAGCTCATGAAAAGTTGCAGAGAAAGGGAGGTGGTTCCACATCAGATAATAAGCCACTTGATGCAAAGACATTGAGACGTTTAGCACAAAACAGAGAGGCTGCAAGGAAAAGTCGCCTAAGGAAAAAGGCTTATGTGCAGCAACTAGAGTCAAGTAGATTAAAGCTTACACAACTTGAACAAGACCTTCAAAGAGCACGATCTCAGGGTATGTTCATGGATTGGAGTGGTGGTGTTGGAAGCAATATTAGCTCTGGTGCAATGTTTGACATGGAATATGCAAGATGGTTAGAAGAGGATAACCGTTTGTTAACGGAGCTTCGAAACGGGTTAGAAGCGGCGTTATCAGATAATGAAATGAGAGTAATGGTGGAAGGGTATTTATGTCATTATGACGAAGTATTTAGGGTGAAAGGCGTGACTGCAAAAGCAGACGTGTTTCATGTTATAAATGGCGGGTGGACTTCTCAAGCTGAACGGTGTTTTCTATGGATCGGTGGTTTTAGACCCTCAGAaataataatgATGTTGATCCAACAATTAGAAGCAGTAGCGGAGCAACAGATAATGGGAATGTATGGACTTCGACATTCATCACAACAAGCAGAGGAGGCTCTGTCTCAAGGACTTGATCAGTTGCAACAATCTGTTGTGGACACCATTGCTGGAGCTCCTCTTGTTGATGGTGTTCAACAAATGGTTGTTGCTGTTGGTAAGCTTGCCAATCTTGAAGGGTTTCTTCGCCAGGCCGATAATTTGAGGCAACAAACTCTTCACCAATTATGTCGATTACTCACAGTTCGTCAAGCTGCACGCTCTTTTCTTGTTATTGGAGAATACTATGCAAGACTTCGAGCCCTTAGTTCTCTTTGGGCATCAAGATCACGAGATCAGACCATCATTACTAGTGATGAAAACTCATGCCAAACAACCACTGACATGCAAATGCTTCAACCTTCTCACAATCATTTCTCCAGTTTCTGA 1437 0.405 MASQRIGELDFSEPYGIHHRINNPSSSLINDQGSGFDFGELEEAIGLQGVKIRNDETKASFFTGKPAATLEMFPSWPMRFHQSSIGGTNNKSGGESSDSALSSKNENPFEPESPLSKKASSFCSSDQLQHLQLQQDMTNNNDVIKTASSPKSAHEKLQRKGGGSTSDNKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDLQRARSQGMFMDWSGGVGSNISSGAMFDMEYARWLEEDNRLLTELRNGLEAALSDNEMRVMVEGYLCHYDEVFRVKGVTAKADVFHVINGGWTSQAERCFLWIGGFRPSEIIMMLIQQLEAVAEQQIMGMYGLRHSSQQAEEALSQGLDQLQQSVVDTIAGAPLVDGVQQMVVAVGKLANLEGFLRQADNLRQQTLHQLCRLLTVRQAARSFLVIGEYYARLRALSSLWASRSRDQTIITSDENSCQTTTDMQMLQPSHNHFSSF 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02230 478 SMART brlzneu 170 236 IPR004827 GO:0003700|GO:0006355
Car01g02230 478 MobiDBLite consensus disorder prediction 81 110 - -
Car01g02230 478 PANTHER TRANSCRIPTION FACTOR TGA9 58 455 - -
Car01g02230 478 PANTHER TRANSCRIPTION FACTOR TGA9 58 455 - -
Car01g02230 478 ProSiteProfiles DOG1 domain profile. 237 445 IPR025422 GO:0006351|GO:0043565
Car01g02230 478 SUPERFAMILY Leucine zipper domain 174 216 IPR046347 GO:0003700|GO:0006355
Car01g02230 478 Coils Coil 193 220 - -
Car01g02230 478 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 177 192 IPR004827 GO:0003700|GO:0006355
Car01g02230 478 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 172 216 IPR004827 GO:0003700|GO:0006355
Car01g02230 478 MobiDBLite consensus disorder prediction 143 174 - -
Car01g02230 478 Pfam bZIP transcription factor 173 215 IPR004827 GO:0003700|GO:0006355
Car01g02230 478 MobiDBLite consensus disorder prediction 81 121 - -
Car01g02230 478 CDD bZIP_HBP1b-like 174 224 - -
Car01g02230 478 Pfam Seed dormancy control 255 328 IPR025422 GO:0006351|GO:0043565
Car01g02230 478 Gene3D - 173 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02230 Car-Chr1 48135208 48139953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02230 145 478 bZIP Transcription Factor Family AT1G08320 67.463 1.03e-167 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Car01g02230 DOG1 1.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02230 K14431 - gmx:100775461 657.521