Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02225 ATGGGTTTGAGGGATCATTGCATTAATGTAGAAGACAAGAATCTATACCTTCAAACCCCAACTTTCATTGAATGGCTCAAACcatcttcctcactctcatcatcatctccttcatcttctttacctcatcatGAACACAAATTATCCCAAGAAACTTTTCAATTTTTACCTATCTTGAGTGGAACTAAGTCCTTTGAGGAAAACCATGTGATGCAAAAGGAAGATTTTGAAGTTAAAGAAGAAAAGGTGGCTTTGCACATTGGATTGCCTAACACTAatgatgatgatcatgatgagaagatTAAGGGTTTTCATGTTAAGgaagaagaagaagaagaattgaagaaaaaTATTCATGGTTTTTCTCTTAAGGAGGAGAAAAGGTTTTGGATACCAACTCCTTCTCAAATCCTTGTTGGACCTATGCAATTTGCTTGCTCCATATGTAGTAAGACCTTCAATAGATACAACAATATGCAGATGCATATGTGGGGGCATGGATCCGAATTTAGGAAAGGACCAGACTCACTCAAAGGAACACAACCAGCAGCAATGCTAAGGCTACCATGTTACTGTTGTTCTCATGGTTGCAAGAACAACATCAACCATCCAAGAGCAAAACCATTGAAGGATTTCAGAACTCTCCAAACTCATTACAAAAGAAAACATGGTACAAAACCATTCATCTGCAGAAAATGTTCTAAATCATTTGCTGTTAAAGGAGATTGGAGGACTCATGAGAAAAATTGTGGAAAGTTTTGGTATTGCACTTGTGGTTCTGATTTTAAACACAAAAGATCTCTTAAAGATCATGTTAGATCTTTCGGAAAAGGTCACTCACCAAACCCTTCTCTCGAAGGATTTGATGATGAGAAAGAATGCAATACTGGATCCGATGAAGATCAACATTGCTAG 915 0.3333 MGLRDHCINVEDKNLYLQTPTFIEWLKPSSSLSSSSPSSSLPHHEHKLSQETFQFLPILSGTKSFEENHVMQKEDFEVKEEKVALHIGLPNTNDDDHDEKIKGFHVKEEEEEELKKNIHGFSLKEEKRFWIPTPSQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCSHGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFICRKCSKSFAVKGDWRTHEKNCGKFWYCTCGSDFKHKRSLKDHVRSFGKGHSPNPSLEGFDDEKECNTGSDEDQHC 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02225 304 PANTHER ZINC FINGER PROTEIN WIP2 45 302 IPR043584 GO:0003700|GO:0010468
Car01g02225 304 PANTHER ZINC FINGER PROTEIN WIP2 1 40 IPR043584 GO:0003700|GO:0010468
Car01g02225 304 SUPERFAMILY beta-beta-alpha zinc fingers 214 248 IPR036236 -
Car01g02225 304 MobiDBLite consensus disorder prediction 284 304 - -
Car01g02225 304 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 40 - -
Car01g02225 304 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 45 302 - -
Car01g02225 304 SUPERFAMILY beta-beta-alpha zinc fingers 130 167 IPR036236 -
Car01g02225 304 SMART c2h2final6 191 223 IPR013087 -
Car01g02225 304 SMART c2h2final6 228 248 IPR013087 -
Car01g02225 304 SMART c2h2final6 144 166 IPR013087 -
Car01g02225 304 MobiDBLite consensus disorder prediction 272 304 - -
Car01g02225 304 Pfam C2H2-type zinc finger 144 163 - -
Car01g02225 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 171 IPR013087 -
Car01g02225 304 Gene3D Classic Zinc Finger 143 166 - -
Car01g02225 304 Gene3D Classic Zinc Finger 224 284 - -
Car01g02225 304 ProSitePatterns Zinc finger C2H2 type domain signature. 146 166 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02225 Car-Chr1 48075838 48078987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02225 11 296 C2H2 Transcription Factor Family AT1G08290 55.988 1.86e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car01g02225 zf-C2H2_6 0.00013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02225 - - gmx:100819306 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02225 01 48075838 48078987 Car06g03366 06 63043751 63047099 PCT