Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02224 ATGGCGGAAGAACACAGATGCCAGGCACCACGCTTATGCGTCAACAATTGCGGTTTCTTTGGAAGCACCGCGACGCAGAATCTATGTTCAAGGTGTTACCGCGATTTGCAGATGAAGGAACAGCAAGCTTCATCAGCGAAACTCGTTCTCAATCAATCGATTGTATCGCCGACGAAAGCGGTGGTTTCTCAGCCGTCTTCTTCTTCGTCGGAGCGGGTTGGATTGCCTTCCGTTGCGGAGGAGGAGAAACCGTTGCAGCAGAATCGGTGTATGACGTGTAGAAAGCGCGTGGGGCTCACGGGGTTTAAGTGTAAGTGCGGGTTGATGTTGTGTGGGACCCACCGTTACCCGGAGCAGCACGCGTGCGAGTTTGATTTTAAGGGGTTGGGGAGAGAGCAGATCGCGAAGGCGAACCCGGTTGTGAAGGGCGAGAAGCTTGAGAAGATCTGA 450 0.5356 MAEEHRCQAPRLCVNNCGFFGSTATQNLCSRCYRDLQMKEQQASSAKLVLNQSIVSPTKAVVSQPSSSSSERVGLPSVAEEEKPLQQNRCMTCRKRVGLTGFKCKCGLMLCGTHRYPEQHACEFDFKGLGREQIAKANPVVKGEKLEKI 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02224 149 SUPERFAMILY AN1-like Zinc finger 80 144 IPR035896 -
Car01g02224 149 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Car01g02224 149 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 1 149 - -
Car01g02224 149 MobiDBLite consensus disorder prediction 58 80 - -
Car01g02224 149 Gene3D - 68 145 IPR035896 -
Car01g02224 149 SMART AN1_Zf_4 90 127 IPR000058 GO:0008270
Car01g02224 149 Gene3D - 1 67 - -
Car01g02224 149 MobiDBLite consensus disorder prediction 58 74 - -
Car01g02224 149 ProSiteProfiles Zinc finger AN1-type profile. 84 130 IPR000058 GO:0008270
Car01g02224 149 Pfam AN1-like Zinc finger 90 126 IPR000058 GO:0008270
Car01g02224 149 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 60 - -
Car01g02224 149 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Car01g02224 149 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 149 - -
Car01g02224 149 Pfam A20-like zinc finger 11 34 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02224 Car-Chr1 48068679 48069638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02224 1 149 C2H2 Transcription Factor Family AT3G52800 50.000 1.44e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02224 - - gmx:100807363 246.899