Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car01g02223 | ATGTACAGCAATTTCAAAGAACAAGCGATAGAGTACGTGAAACAAGCCGTTCACGAGGACAATGCTGGTAACTACGCGAAAGCTTTTCCCCTTTACATGAACGCTTTGGAGTATTTCAAGACTCATCTAAAGTATGAGAAGAACCCTAAGATTCGAGAAGCTATTACGCAGAAATTCACCGAGTATTTGCGTCGTGCTGAGGAGATCAGGGCCGTGCTTGACGATGGTGGGCCTGGTCCGGCTTCGAATGGAGATGCTGCTGTGGCTACGAGGCCCAAGAGTAAGCCCAAGGATGGGGAAGGTGGAGGTGATGGAGAGGATCCGGAGCAGGCGAAACTTAGGGCTGGATTGAATTCGGCGATTATTAGGGAAAAACCTAATGTGAAGTGGAATGATGTCGCTGGGTTGGAGAGTGCCAAACAGGCTTTGCAGGAAGCTGTGATTTTGCCTGTGAAGTTTCCTCAGTTCTTTACTGGTAAAAGACGACCATGGAGAGCATTTTTGTTGTATGGACCTCCTGGAACTGGTAAATCATATTTAGCTAAGGCAGTTGCAACTGAGGCTGATTCCACATTTTTCAGTATTTCTTCATCAGATCTTGTGTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAACCTTTTCCAAATGGCCCGAGAAAGTGCCCCCTCTATCATATTTATCGATGAAATTGATTCCCTATGTGGTCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGAATCAAAACAGAACTTCTGGTGCAGATGCAGGGTGTAGGAAACAATGACCAGAAAGTTCTTGTTCTTGCAGCAACAAATACACCTTATGCTTTAGACCAGGCAATAAGGCGTCGTTTTGATAAGCGTATATATATTCCACTACCAGATTTGAAGGCTCGCCAACACATGTTCAAGGTGCATCTTGGAGATACTCCTCATAATTTGACTGAAAGTGATTTTGAATACTTGGCTAGCAGGACAGAGGGGTTTTCCGGTTCAGATATATCTGTCTGTGTGAAGGATGTTTTGTTTGAACCTGTTCGCAAAACCCAAGATGCTATGTTCTTCTTTAAGAGCCCTGAGGGTATGTGGATCCCATGTGGACCAAAGCAACAGGGGGCAGTTCAAACTACAATGCAGGATCTTGCTACAAAAGGACTTGCTTCTAAGATCCTTCCACCCCCTATTACGAGAACAGATTTTGAAAAGGTTTTGGCTAGACAAAGGCCTACAGTAAGCAAATCTGACCTTGAGGTTCATGAGAGATTCACAAAGGAGTTTGGAGAAGAAGGTTAA | 1305 | 0.4452 | MYSNFKEQAIEYVKQAVHEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKSKPKDGEGGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEYLASRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKSPEGMWIPCGPKQQGAVQTTMQDLATKGLASKILPPPITRTDFEKVLARQRPTVSKSDLEVHERFTKEFGEEG | 434 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car01g02223 | 434 | SMART | smart | 2 | 79 | IPR007330 | - | |
| Car01g02223 | 434 | CDD | AAA | 134 | 297 | - | - | |
| Car01g02223 | 434 | MobiDBLite | consensus disorder prediction | 73 | 110 | - | - | |
| Car01g02223 | 434 | ProSitePatterns | AAA-protein family signature. | 269 | 288 | IPR003960 | GO:0005524|GO:0016887 | |
| Car01g02223 | 434 | Gene3D | - | 299 | 414 | - | - | |
| Car01g02223 | 434 | SUPERFAMILY | MIT domain | 2 | 81 | IPR036181 | - | |
| Car01g02223 | 434 | Gene3D | - | 6 | 75 | - | - | |
| Car01g02223 | 434 | Gene3D | - | 126 | 422 | IPR027417 | - | |
| Car01g02223 | 434 | MobiDBLite | consensus disorder prediction | 91 | 110 | - | - | |
| Car01g02223 | 434 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 126 | 430 | IPR027417 | - | |
| Car01g02223 | 434 | Pfam | ATPase family associated with various cellular activities (AAA) | 168 | 297 | IPR003959 | GO:0005524|GO:0016887 | |
| Car01g02223 | 434 | Pfam | Vps4 C terminal oligomerisation domain | 367 | 431 | IPR015415 | - | |
| Car01g02223 | 434 | Pfam | MIT (microtubule interacting and transport) domain | 7 | 70 | IPR007330 | - | |
| Car01g02223 | 434 | PANTHER | AAA-TYPE ATPASE FAMILY PROTEIN | 1 | 434 | - | - | |
| Car01g02223 | 434 | PANTHER | AAA DOMAIN-CONTAINING | 1 | 434 | - | - | |
| Car01g02223 | 434 | CDD | MIT_VPS4 | 4 | 77 | IPR045253 | - | |
| Car01g02223 | 434 | SMART | AAA_5 | 163 | 299 | IPR003593 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car01g02223 | Car-Chr1 | 48055205 | 48060417 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car01g02223 | 162 | 355 | Calmodulin-binding Proteins | AT3G56690 | 36.735 | 3.44e-35 | 137 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car01g02223 | K12196 | - | gmx:100788150 | 825.854 |