Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02215 ATGGAAGAGCACGAGAATGGCGCGAATATAATCGATGATGAACCGTTAGTTGGACCCGGTCCAGCCCCACGCGCTCGACCAAAACGACCCCTCCAGTTCGAGCAAGCTTATATCGATGCATTACCCTCCGCTAACATGTATGAGAAAAGTTATATGCATCGTGATGTGGTTACACATGTTGCTGTTTCGGCTGCAGAGTTTTTCATTACTGGAAGTGCTGATGGGCATTTGAAGTTTTGGAAGAAAAGGCCTATTGGTATTGAATTTGCAAAACATTTCAGATCTCATCTTGGTCCTATTGAAGGTCTAGCTGTTAGTATTGATGGTCTGCTTTGCTGTACAATATCAAATGATCGTTCTGTAAAAGTATACGATGTAGTCAACTATGATATGATGGTGATGATTCGGTTGCCATTTTTCCCTGGTGCTATTGAATGGGTTTACAATCAAGGGGATGTCAAAGCTAGGCTTGCTATTAGTGATAAGAACTCATCTTTTGTTCACATATTTGATGCACGGTCTGGTTCAAATGATCCAATCATCTCCAAAGAGATACATATGGGTCCTGTTAAAGTTATGAAGTACAACAATGTGTATGATACTGTAATTTCAGCAGATACTAAGGGTATCGTTGACTATTGGAACCCTGCGACACTCCAATTCCCAGAGAATGAGGTGAATTTTAAGTTGAAAAGTGATACTAATCTCTTTGAAATCGCAAAATGCAAGACTTCTGTTTCGGCTATCGAGGTCAGCCCAGATGGTAAACAATTTTCCATTACATCACCTGACCGCAGGATACGTGTATTTTGGTTCAGAACGGGTAAACTAAGGCGAGTTTATGATGAATCCCTGGAGGTTGCTCAAGATCTCCAAAGAAGTGATGCTCCATTAtatcgattggaagccattgattttggtcgaagaatggctgttgagagggaaatagagaagacagaaagtgcaccacaacccaatgcagtttttgatgatagttccaactttcttatatatgcAACCTTGCTTGGGATTAAAATTGTTAATTTGCACACCAATAAAGTTGCTCGGATACTTGGAAAGGTGGAGAATAATGATAGATTCTTAAGAATAGCTTTATACCATGGTGAACGAAGTAGCAAAAAAGTAAGAAAGATTCCTTCAGCTGCTGCAAATGCTAATGAGAGCAAGGAGCCTTTGACAGATCCTACTCTCCTATGCTGTGCTTTCAAAAAGCACCGGATATATTTATTCAGTCGAAGAGAGCCAGAGGAGCCTGAAGATGCAACTAAGGGAAGAGATGTGTTCAATGAAAAACCTCCTGCTGATGAACTTTTGGCAGTTTCAGATATTGGAAAGGCAGTTACAACATCACTTCCTGACAATGTGATTATGCACACCACAATGGGTGATATTCACATGAAGTTATACCCAGAGGAATGTCCAAAAACTGTGGAAAACTTTACAACTCACTGCAAAAATGGCTACTATGACAATCTTATTTTTCACAGGGTCATCAAAGGTTTCATGGTACAAACAGGAGATCCTTTAGGAGACGGCACTGGTGGGCAATCCATTTGGGGAAGGGAATTTGAAGATGAATTTCACAAAAGTTTAAGGCATGATAGGCCTTTCACATTGTCAATGGCAAATGCGGGGCCAAATACAAACGGTTCTCAGTTTTTTATCACCACAGTGGCTACTCCATGGCTGGACAACAAGCACACTGTATTTGGTAGAGTTGTGAAGGGAATGGATGTTGTCCAGGTAAATTGGCTTCTAACCTTCCATAACCATTATCGAGTACAACATCTTGAGTCATGTCATAACTTGGAATTGCCCCAATGCCCTCGTGCAGATTCATTAAATTAG 1869 0.382 MEEHENGANIIDDEPLVGPGPAPRARPKRPLQFEQAYIDALPSANMYEKSYMHRDVVTHVAVSAAEFFITGSADGHLKFWKKRPIGIEFAKHFRSHLGPIEGLAVSIDGLLCCTISNDRSVKVYDVVNYDMMVMIRLPFFPGAIEWVYNQGDVKARLAISDKNSSFVHIFDARSGSNDPIISKEIHMGPVKVMKYNNVYDTVISADTKGIVDYWNPATLQFPENEVNFKLKSDTNLFEIAKCKTSVSAIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEREIEKTESAPQPNAVFDDSSNFLIYATLLGIKIVNLHTNKVARILGKVENNDRFLRIALYHGERSSKKVRKIPSAAANANESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLAVSDIGKAVTTSLPDNVIMHTTMGDIHMKLYPEECPKTVENFTTHCKNGYYDNLIFHRVIKGFMVQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQVNWLLTFHNHYRVQHLESCHNLELPQCPRADSLN 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02215 622 SMART WD40_4 176 215 IPR001680 GO:0005515
Car01g02215 622 SMART WD40_4 86 125 IPR001680 GO:0005515
Car01g02215 622 SMART WD40_4 232 271 IPR001680 GO:0005515
Car01g02215 622 SMART WD40_4 44 81 IPR001680 GO:0005515
Car01g02215 622 SUPERFAMILY Cyclophilin-like 457 588 IPR029000 -
Car01g02215 622 Gene3D - 40 302 IPR015943 GO:0005515
Car01g02215 622 SUPERFAMILY WD40 repeat-like 55 278 IPR036322 GO:0005515
Car01g02215 622 Gene3D - 445 598 IPR029000 -
Car01g02215 622 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 496 513 IPR020892 GO:0003755|GO:0006457
Car01g02215 622 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 458 588 IPR002130 GO:0000413|GO:0003755
Car01g02215 622 PANTHER PEPTIDYLPROLYL ISOMERASE DOMAIN AND WD REPEAT-CONTAINING PROTEIN 1 7 588 - -
Car01g02215 622 MobiDBLite consensus disorder prediction 1 28 - -
Car01g02215 622 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 81 IPR001680 GO:0005515
Car01g02215 622 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 7 588 IPR044666 -
Car01g02215 622 CDD cyclophilin_WD40 463 588 - -
Car01g02215 622 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 475 490 IPR002130 GO:0000413|GO:0003755
Car01g02215 622 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 501 513 IPR002130 GO:0000413|GO:0003755
Car01g02215 622 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 544 559 IPR002130 GO:0000413|GO:0003755
Car01g02215 622 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 559 571 IPR002130 GO:0000413|GO:0003755
Car01g02215 622 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 572 587 IPR002130 GO:0000413|GO:0003755
Car01g02215 622 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 462 588 IPR002130 GO:0000413|GO:0003755
Car01g02215 622 SUPERFAMILY Tricorn protease domain 2 242 418 - -
Car01g02215 622 Pfam WD domain, G-beta repeat 91 125 IPR001680 GO:0005515
Car01g02215 622 Pfam WD domain, G-beta repeat 57 81 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02215 Car-Chr1 47943376 47949019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02215 462 584 U-box Gene Family AT5G67530 49.593 1.02e-33 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02215 K12736 - gmx:100792207 1110.13