Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02200 ATGGAATTCTGGGGTGCTGAAGTTAAGGTGGGTGAAACTGTTAAGGTTGACCCAAGTGAATTTGAGGCATGCATTCACCTTTCTCAGGCTGCACTCGGAGAGACAAAGAAAGACAAACCTAGTGATCCTGTCGTTCTTTTCTTGAAAGTTGGTGATAAAAAGCTTGTTTTGGGAACCCTAATCAAGGATAAAATTCCCCAGACATCCCTTGAATTGGTCTTGGACAAAGATTTTGAGCTTTCTCACAATTCAAAATCGGCTAGTGTCCATTTCTGCGGATACAAAGCATATTATCCCGGTGAAGATAGTGATGAAGATGACTTTACTGATAGTGAAGATGATATTCCCTTGGCTAATGAAGAGAATGGTAAACTCGAAACAAAAGTTGAAGGTTTAAAGGTATCTGCAGCCAAAAATGCTGTACCAGTTAAGAGCGGTGGACCTGCAAAACAAGTAAAGGTTGTTGATCCAAAGAAAGACGAAGATTCTGATGAAGATGAGGAAATTGCAAGCTCTGATGAAGAGatggatgatgctgatagcgatgatgatgaggaggatgacagtgatgaagatgctgaggaagagactcctgtgaagaagGTGGACCAAGGAAAGAAGAGGCCCAACGAATCTGCTTCAAAAACTCCGGTTTCTAATAAGAAATCAAAAAATGCCACCCCTGAAAAGACTGATGGCAAGAAATCTGGACATGCTGCTACTCCTCACCCTAAGAAAGGTGCAAAGACTCCCAACAGTGAATCTAAGTCTCCCAAGTCTGGAGGACATCTCTCTTGCAAAAGCTGCAGCAAGACTTTCAACTCCGAAACTGGACTCCTACAACACAGTAAGGCTAAGCATGGTGGTCAGTGA 873 0.386 MEFWGAEVKVGETVKVDPSEFEACIHLSQAALGETKKDKPSDPVVLFLKVGDKKLVLGTLIKDKIPQTSLELVLDKDFELSHNSKSASVHFCGYKAYYPGEDSDEDDFTDSEDDIPLANEENGKLETKVEGLKVSAAKNAVPVKSGGPAKQVKVVDPKKDEDSDEDEEIASSDEEMDDADSDDDEEDDSDEDAEEETPVKKVDQGKKRPNESASKTPVSNKKSKNATPEKTDGKKSGHAATPHPKKGAKTPNSESKSPKSGGHLSCKSCSKTFNSETGLLQHSKAKHGGQ 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02200 290 MobiDBLite consensus disorder prediction 137 290 - -
Car01g02200 290 MobiDBLite consensus disorder prediction 195 210 - -
Car01g02200 290 ProSitePatterns Zinc finger C2H2 type domain signature. 266 287 IPR013087 -
Car01g02200 290 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 285 - -
Car01g02200 290 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Car01g02200 290 MobiDBLite consensus disorder prediction 161 194 - -
Car01g02200 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 264 290 IPR013087 -
Car01g02200 290 MobiDBLite consensus disorder prediction 102 122 - -
Car01g02200 290 PANTHER HISTONE DEACETYLASE HDT1-LIKE 1 285 - -
Car01g02200 290 MobiDBLite consensus disorder prediction 225 239 - -
Car01g02200 290 Gene3D Nucleoplasmin core domain 1 99 - -
Car01g02200 290 MobiDBLite consensus disorder prediction 251 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02200 Car-Chr1 47765916 47769016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02200 1 287 C2H2 Transcription Factor Family AT5G03740 37.942 7.15e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02200 - - gmx:100792094 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02200 01 47765916 47769016 Car06g03397 06 63597259 63600956 PCT