Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02197 ATGCAGTGGTTTTCAAATTTCCACCTAAAAAGCTATCTGCTTCGCCTTCTCCTGATTGGTAGAATACCAAATGAATGGGCTCGGTGTTTGTTGCCACTGGTTCGGGATAATAAAGTCAGGGTTGAAGGGGAATGTAAATTTGCTCCTAATGTATTGGCCATCATGGACACGATCATTTTGTCAATTAGCGTCTTCATCAATAGGTCAATGTTTGTTAAGCAACATGAGGTTTCTCTCAAGGATGCTACTAATTCGACAGATGAATCAGTGTTTCATCCTCTTCCAGCCCTGTTTAGATTGCTTGGTTTAAGCCCTTTCAAGAAGGCGGAGTTAACTCCTGGTGATTTCTATTCCAACAAGCGTCCTTTCAGTCAAATGGTCCCATTACTACATGCCAAGTCTGAGCGTCCTTCTCAAAATGGTCATGATAATGAAAATGAGGATTCTGTTTCTGAATTTGATCTTGACAACATTGTTGGTGTTGCATCAAGCTCAGAATTAGAGGAAATGGACCCCCCTGGAAATCTTCTGTGTGAACTGCGTCCATATCAAAAACAGGCTCTTTATTGGATGGTTCAGATGGAGAAGGGACGACCAAGGGACGAGACCGCAACAACCCTTCATCCATGTTGGGAGGCATATCGCCTCGTTGACAAGAGGGAGCTTGTTGTTTATTTGAATGCATTTTCTGGTGAAGCCACAACAGAATTTCCTAGCACTCTTCAAATAGCCAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCACTACTCACTGCCCATTCAGGAAGGGGTGCATCATTAGGCAGTCAACCCATAGCTCAGTCCTTTATTGAAGGCGGTGAAGTTAGTGATAATGATACAATTCCCAATTTTTCACATATTCCGAAGAAGGCAACCAAATTTGCTGGTTTTGATAAATCGAAGAAGCAAAACACTTCTCTAACACGTGGCGGCAACTTGATAATATGTCCCATGACACTTCTTGGGCAGTGGAAGGCAGAGATTGAAACTCATGTGCACCCTGGGTCCCTGTCTATATATGTTCATTATGGACAAAGTAGGCCCAAAGATGCCAAAAGTCTAGCTCAATGTGATGTTGTAATTACTACATATGGAATTTTGGCCTCTGACTTTTCCAGTGAGAATGCAGAGAATAATGGTGGACTCTTCTCAATTCGTTGGTTCAGAGTGGTTCTTGACGAGGCACATACAATAAAGTCTTCTAAAAGTCAAGTTTCTATGGCTGCTTCTGCTCTAATTGCTGACAACCGCTGGTGTCTTACTGGGACTCCAATCCAGAACAACCTTGAAGATATTTACAGTCTTCTTCGCTTTCTGAGAATAGAGCCTTGGGGACATTGGGCCTGGTGGAACAAGCTCATTCAGAAACCATTTGAGGGTGGTGACGAGAGAGGATTGAAATTAGTTCAGTCCATTTTGAAGCCGATCATGTTGAGAAGAACCAAAAATAGCACAGATCGAGAGGGCAAGCCTATACTAGTTCTCCCTCCAGCTGATATGCAGGTAATTTACTGTGAACCCACAGAAGCTGAAAAGGACTTTTATGAAGCCTTATTCAAAAGATCTAAGGTAAAGTTTGATCAATTTGTTGAGCAAGGACGTGTTCTTCATAATTATGCTTCAATACTAGAGCTACTTTTACGTCTTCGGCAATGTTGTGACCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGAATTTGCTGATCTAAACAAACTAGCTAAGCGTTTCCTTAAAGGAACCTGTAATGCTTCGGAAGGTCAAGTAAAAGATGCCCTCTCACGAGCTTATGTTCAAGAAGTTGTGGACGAGCTGCGTAAAGGGGAGCAGGGAGAATGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTGTTAACACCGTGTGCTCACCGCCTTTGCCGGGAATGCCTCTTGTCAAGTTGGCGAAATTCTACCTCTGGTTTATGTCCTGTTTGTAGGAAAACAATCAGTAAGCAGGATCTTATCACTGCCCCTACTGAGAGTCGATTTCAGATTGATATTGAGAAGAACTGGATAGAGTCATGCAAGGTAACTGGTCTTTTGAATGAACTTGAAAATCTCCGCTCCTCAGGCTCTAAGAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTCGGAATAGAATTTCATTTGTTCGTCTTGATGGGACATTGAATATGCAGCAGCGGGAAAAAGTAATCAAACAATTCTCAGAAGACAGCGACATACAGGTGTTGTTGATGTCACTAAAAGCTGGTGGAGTGGGTATAAATCTAACAGCAGCTTCCAATGCTTTTGTCATGGACCCATGGTGGAATCCAGCTGTCGAGGAGCAAGCTGTTATGCGTATTCATCGCATTGGGCAAACAAAGAAGGTGGCTATCAAACGGTTTATTGTTAAGGGGACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCACGCAAACAACGAATGATTTCTGGCGCCTTGACAGATCAAGAAGTTCGAACTGCACGAATTGAGGAGTTGAAGATGCTTTTTACTTAG 2595 0.4285 MQWFSNFHLKSYLLRLLLIGRIPNEWARCLLPLVRDNKVRVEGECKFAPNVLAIMDTIILSISVFINRSMFVKQHEVSLKDATNSTDESVFHPLPALFRLLGLSPFKKAELTPGDFYSNKRPFSQMVPLLHAKSERPSQNGHDNENEDSVSEFDLDNIVGVASSSELEEMDPPGNLLCELRPYQKQALYWMVQMEKGRPRDETATTLHPCWEAYRLVDKRELVVYLNAFSGEATTEFPSTLQIARGGILADAMGLGKTIMTISLLTAHSGRGASLGSQPIAQSFIEGGEVSDNDTIPNFSHIPKKATKFAGFDKSKKQNTSLTRGGNLIICPMTLLGQWKAEIETHVHPGSLSIYVHYGQSRPKDAKSLAQCDVVITTYGILASDFSSENAENNGGLFSIRWFRVVLDEAHTIKSSKSQVSMAASALIADNRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKNSTDREGKPILVLPPADMQVIYCEPTEAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLNKLAKRFLKGTCNASEGQVKDALSRAYVQEVVDELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLSSWRNSTSGLCPVCRKTISKQDLITAPTESRFQIDIEKNWIESCKVTGLLNELENLRSSGSKSIVFSQWTAFLDLLQIPFTRNRISFVRLDGTLNMQQREKVIKQFSEDSDIQVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMLFT 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02197 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 681 IPR013083 -
Car01g02197 864 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 238 457 IPR014001 -
Car01g02197 864 PANTHER DNA REPAIR PROTEIN RAD5 19 864 - -
Car01g02197 864 Pfam HIRAN domain 19 62 IPR014905 GO:0003676|GO:0008270|GO:0016818
Car01g02197 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 507 853 IPR027417 -
Car01g02197 864 CDD RING-HC 629 668 - -
Car01g02197 864 CDD DEXDc_SHPRH-like 180 495 - -
Car01g02197 864 CDD SF2_C_SNF 695 822 - -
Car01g02197 864 Pfam Helicase conserved C-terminal domain 703 811 IPR001650 -
Car01g02197 864 Gene3D - 305 496 IPR038718 -
Car01g02197 864 SUPERFAMILY RING/U-box 618 675 - -
Car01g02197 864 Gene3D - 239 285 IPR038718 -
Car01g02197 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 495 IPR027417 -
Car01g02197 864 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 699 864 IPR001650 -
Car01g02197 864 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 19 864 - -
Car01g02197 864 ProSiteProfiles Zinc finger RING-type profile. 629 669 IPR001841 -
Car01g02197 864 SMART ultradead3 176 479 IPR014001 -
Car01g02197 864 Pfam Zinc finger, C3HC4 type (RING finger) 626 674 - -
Car01g02197 864 Pfam SNF2-related domain 183 573 IPR000330 GO:0005524|GO:0140658
Car01g02197 864 ProSitePatterns Zinc finger RING-type signature. 644 653 IPR017907 -
Car01g02197 864 Gene3D - 511 864 IPR027417 -
Car01g02197 864 SMART helicmild6 728 811 IPR001650 -
Car01g02197 864 SMART ring_2 629 668 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02197 Car-Chr1 47736266 47746351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02197 19 864 RAD5 or RAD16-like Gene Family AT5G22750 75.176 0.0 1334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car01g02197 SNF2_N 4.5e-87 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02197 K15505 - gmx:100794452 1518.06