Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02196 ATGAAGCTTCCGCGAAAATCCAAAGCGACGGAACCACCACCGGTTCCGAAGCGGAGAGGTCGACCGCGAAAACAGAGAAGAAAAGAGAACGAAACCGTGACAATCGAATCAAAGAAAACGACGCCGATAGTATTAATTGGACGTTACGTTTTGAAAGAATTTCGAAAACGTGTTGTTCTAATCGGAAAAGTTGTAAGCTATAATAGCGGTTTATACAGAGTCGAGTATGAAGATGGAGGTGGTGAGAATTTGAATAGTAGCGATATTCGTAGAATTGTTCTTAATGATTGTGATTTTGACGACGATTTGATTAGAAGAAAAAGTGAACTGGATGAATCGTTGTTGTCTAAGATCGTTAATGAATTGGAAAATAATTCGAGTGAATTACATGTGGCAAACGAAGATGTAACCGATGTTGATTCGTTTAATGATTCTAGGGATTCGTGTTCCGATGCTGAGACGCCGTTGGAATTGACGCCGTTAGAATTGCCGCCTATGTTGCAGTTGCCGCCGTCTTCGGGAACTATTGGTGTGCCGGAGAATTCTGTTTCGCACCTGTTTTCAGTTTATGGATTCTTACGATCGTTCAGTACTCGATTGTTTTTGAGTCCGTTTAGTTTGGATGAGTTCGTTGGCGCTCTTAACTGTCGAGTATGGAATACTTTGCTTGATGCTGTTCATGTTTCCTTGATGCGTGCTTTGAGACGTCATCTTGAAAATCTTTCAGCTGAAGGCTCGAAGATTGCATCAAAGTGCCTTAGGTGCAGTGAATGGAGCTTGCTTGATACATTGACTTGGCCTGTTTTCTTAATTCAATATTTAGCAGTTAATGGATACACAAAGGGGTCTGAGTGGAAAGGATTTTATGACGAGATTTTTTATGGAGAATATTATTCATTGCCTGCAAGTAGGAAGTTAATAATATTGCAAATTCTCTGCGATGATGTTTTGGAGTCTGAAGAGCTAAAAGCTGAAATGAACATGCGTGAAGAATCAGAGGTTGGGGCGAATTATGATGCTGATGAAATTCCTCCTACAGAAAATGGGCCGAAAAGAGTCCATGCCAAAACTGCTGATTGCAAGGATGAAGAATGTATGAATTTGGTTTCAGAATTAGATGCTGTGAACTTACCCGGTAATTCTGAAGATGAGGTTGATAGAAATGGAGATGAATGCCGCCTCTGTGGCATGGATGGGACCTTGCTCTGTTGTGATGGATGTCCTGCTGTTTATCATTCAAGATGTATTGGTGTGATGAAGATGTATATACCAGAAGGGGCATGGTATTGTCCAGAATGCAAAATAAATAAGATTGGGCCAACAATTGCAAAGGGAACATCTCTTAAAGGGGCTGAAATATTTGGAAAGGACTTGTATGGGCAACTTTTCATCGGTACTTGCAACCACTTACTTGTGCTCAATGTCAACAGTGGTGATTTTTGTCTTAAATACTACAATCAGAATGACATTACTGAAGTTATCCGAGTGCTTTATGCTTCCATGCAACATAGAGATGCATACTTTGGTATTTGCATCGCAATGTTACAATATTGGAATATTCCAGAAAGCTTTTTACATCTAAACTCAGAAAATTTGATGATAGACGCAAACATCTCTGCTGCGGCACTTCCTCCTTTGGTTGAAAATGACCATAAAGCTGTTAGTGTGGGGAAGGCAGAATATGGTCTAACATCCTTGAATGGGATTTGTAGTGATAATATAGCGCCGTCTCTAAATGCTTCATTGATTACCACTAGTCCTACTCGTGAAATCAATGGCAATGCTATAACTAAGGAGTCCCCTAACATGAATATGAAGCTTCATAAGGAAACTGTGATGGGTTCTGTTGCTTCAATTGTCAACCATCAGTCTGAAACAAGCTACCCAAATCCTGACAACAGGTCAGCTGCAGCTACTCCTGCCAAGTGCTCCTTGGTAAGCAGCCAATTTATTAATTATGGGAATGCAAATGACATGAGGTTGCCTATGAATTTGTCTTTGCAAACTAAAGGCAACCAAACTGGTTTTGGAAAGTGCAAAGGAAATATAACTAATGATTTTGTGTATATGGGTTGCTCCTATAAACCTCAGTCATACATTAATTACTATATGCATGGTGATTTTGCTGCATCTGCTGCTGCTAACTTGGCCATTCTTTCTTCAGAGGATTCTAGATCAGAGGGTCACATGTCTGACTTGAGAAAAGCTACATCTGAAAACACTAATTTGATAGCAAAAGCATTCTCACTGACAGTTTCACGCTTCTTTTGGCCAAGTTCTGATAAGAAGCTTGTGGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCCTTGTTTCAAGCAAGAAAGGATGCATGTTAAATCAGGCTGCTCTAAGTGCTACCAAAAGTGCCATGAAAGTCCTTTCTGGTCTTGCTCCTGTAAGGAGTGGAGAAGGAATTTTCCCTAGTATTGCAACATATGTCATTTATATGGAGGAAAGCTTACGTGGTTTAATAGATGGGCCCTTTCTTAGTGAAAACTATCGAAAGCAATGGCGTGAACAAGTGGAAAAGGCCACCTCATTTTGTAACATAAAGCCCCTTCTACTTAAACTTGAGGAGAACATTCGTACAATTGCGTTTTGTGGCGACTGGGTGAAGCTAATGGATGAGTGGTTAGTTGAATCTTTTACAATCCAAAGTGCAACATCTACTCTTGGAACAACACAGAAACGTGCATCATGTGCTAGGCACAGAAAACAATTACCAATCAAAGTTACAGTTGACATTTGCTGTGAAAACTTTGTCTGGCGAAATGGAAAACTAACCAAATCCGTATTTCAGAAAGCTGCGCTGCCGAAATTCATGGTCAGAAAAGCAGCTCGGCGAGGTGGTTTGAAGAAAATTTTGGGTATTGTCTATCCTGATGTCTCTGAAATTCCTAAAAGAAGCAGACAGCTGGTTTGGAGAGCTGCTGTTCAAACGAGTAGGAATGCATCACAGCTTGCACTTCAGGTTCGATATCTAGATTTTCATATCAGATGGATTGATCTGATTCGGCCGGAGTATAATTTTCAAGACGGGAAAGGTCAAGATACTGAAGCTTCTGCTTTTAGAAATGCAAATATTTGTGACAAAAAGGTTGTAGAGGGAAAAACATTTTATGGTATAGCTTTTGGGAGCCAAAAGCATATTCCTTCTCGGGTAATGAAGAATGTTGAAATAGATCAAGGGCCAGAAGGAAAGAAGTTCTGGTTTTCTGAAACCCGTGTTCCTTTATATTTGGTAAAAGAGTATGAAGTAAGCAATGTAAAAGAGCCATCTCATAAAGATCATTTGAATATTGCATCTCAATTGCACAAAAGGCGGTTGAATGCTATCTGCAAGGACATATTTTTTTACCTCACTTGCAAGAGAGACAAATTGGACACATTACCATGTTCTGTATGTCAGCTGGGTGTTTTATTAAGGAATGCTCTCAAGTGCAGTGCATGTCAAGGTTATTGTCACGAGGGCTGTTCATTAAATTCAACATTCTCTACATTTAAAGAAGTTGAGTTCTTGACTACATGCAAAAAATGTAATGATGCCAGACTACTCATTAAAAAAGAGCACAGTATTGAATCTACACCCAGTCCCTTAACGTTAAAAGCACAAGAACATAGCTCTTTGGCAATTTCGAAGCCAGCAAAGCCTAAATGTTATGATCAAATACCGAGATCTTCCAAGGTTAAGGATTGTCGTCCTGACATGAAACAAGTTGCTTCCCATCCTCCTGTTGAAACAAAAAGCCGTCGCAGAAACACCTCTTGGGGTATTATTTGGAAAAAGAATAACAGTGAAGATACAGGCTTTGATTTCAGGCTAAAAAACATACTTCTGAAGCGGAGTTCAAGCTTGCCTGGATCGGCGCATCCTGTTTGTCACTTGTGCCGAAAGTCATATAGGCCTGATCTAATGTACATACGCTGTGAAATGTGTACAAGGTGGTATCATGCTGAAGCTATTGAACTTGAAGAGTCCAAAATATTTTCTGTGCTAGGCTTCAAATGTTGCAGGTGTCGCAAGATAAAGTCACCTTTGTGTCCTTACTCTGGTTTGACGTGCAAGGAGCAAAATGGAGAGAAGTCATACCCACGGGCTTCCAAGATAGAGCATTCTAGAGCAGATTCTGGTTCTGGAACACAAGCCGACATTAGAGAATGTGAGCCCGCTACTCCTATCTTTCCTGCAGAGGATGTTTCTAGACAAGAGAATAATCCTCCTTTGCTGTTTTCTCTTTCGAATGTCGAGCTGATTACAGAACCCGTGTTAGATTCAGGTATTACAGAACCCAAGTCAGATTCAGGCATTGAGTGTGATGCTGTCTCTGGGCCAGGGCTTCAGGAAACATCAACAATCAAGAATTTTAAACCTGAGGGAGACAATAATGGCTCTTTTCGAGGTGAAGTTCAGCATGCTGAATTTTCAACACTTGAAGAAAGGGGTAATCTGCCTGCAGAGCTTTTATCACCTTTTTCAGAACATGACTCTTTGTTCGCTGACTGCAATCTTCTGAGTGACTCTGAAATTGCAGATGATGAATACATGGGGTTTGGATCCCAAACCCGCTTCTCTTTGTCTGAACTTCTGCACCTAGATAATAGTAGTCAATTTGAGGAAGCTGATGCGCCCGGGGACTTGTCAGGATTTTCTAAAAATTCCTGTACACTAGATGTTCCTGAAAAATGTGCAACTGCTAGCCTGCAGAACAACTGGAGACCTACAATTTCATCAATTGTTCATAATTGTTTCCAATGTTCACAATCCGAACCAGCCCCCGATCTCTCTTGTCAGATTTGTGGGATGTGGATTCACAGCCAGTGTTCACCCTGGATTGAATCACCATCTAGGCTTGGAGATTGGAGATGTGGTAATTGCAGGGAATGGCTATAG 4926 0.408 MKLPRKSKATEPPPVPKRRGRPRKQRRKENETVTIESKKTTPIVLIGRYVLKEFRKRVVLIGKVVSYNSGLYRVEYEDGGGENLNSSDIRRIVLNDCDFDDDLIRRKSELDESLLSKIVNELENNSSELHVANEDVTDVDSFNDSRDSCSDAETPLELTPLELPPMLQLPPSSGTIGVPENSVSHLFSVYGFLRSFSTRLFLSPFSLDEFVGALNCRVWNTLLDAVHVSLMRALRRHLENLSAEGSKIASKCLRCSEWSLLDTLTWPVFLIQYLAVNGYTKGSEWKGFYDEIFYGEYYSLPASRKLIILQILCDDVLESEELKAEMNMREESEVGANYDADEIPPTENGPKRVHAKTADCKDEECMNLVSELDAVNLPGNSEDEVDRNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMYIPEGAWYCPECKINKIGPTIAKGTSLKGAEIFGKDLYGQLFIGTCNHLLVLNVNSGDFCLKYYNQNDITEVIRVLYASMQHRDAYFGICIAMLQYWNIPESFLHLNSENLMIDANISAAALPPLVENDHKAVSVGKAEYGLTSLNGICSDNIAPSLNASLITTSPTREINGNAITKESPNMNMKLHKETVMGSVASIVNHQSETSYPNPDNRSAAATPAKCSLVSSQFINYGNANDMRLPMNLSLQTKGNQTGFGKCKGNITNDFVYMGCSYKPQSYINYYMHGDFAASAAANLAILSSEDSRSEGHMSDLRKATSENTNLIAKAFSLTVSRFFWPSSDKKLVEVPRERCGWCLSCKALVSSKKGCMLNQAALSATKSAMKVLSGLAPVRSGEGIFPSIATYVIYMEESLRGLIDGPFLSENYRKQWREQVEKATSFCNIKPLLLKLEENIRTIAFCGDWVKLMDEWLVESFTIQSATSTLGTTQKRASCARHRKQLPIKVTVDICCENFVWRNGKLTKSVFQKAALPKFMVRKAARRGGLKKILGIVYPDVSEIPKRSRQLVWRAAVQTSRNASQLALQVRYLDFHIRWIDLIRPEYNFQDGKGQDTEASAFRNANICDKKVVEGKTFYGIAFGSQKHIPSRVMKNVEIDQGPEGKKFWFSETRVPLYLVKEYEVSNVKEPSHKDHLNIASQLHKRRLNAICKDIFFYLTCKRDKLDTLPCSVCQLGVLLRNALKCSACQGYCHEGCSLNSTFSTFKEVEFLTTCKKCNDARLLIKKEHSIESTPSPLTLKAQEHSSLAISKPAKPKCYDQIPRSSKVKDCRPDMKQVASHPPVETKSRRRNTSWGIIWKKNNSEDTGFDFRLKNILLKRSSSLPGSAHPVCHLCRKSYRPDLMYIRCEMCTRWYHAEAIELEESKIFSVLGFKCCRCRKIKSPLCPYSGLTCKEQNGEKSYPRASKIEHSRADSGSGTQADIRECEPATPIFPAEDVSRQENNPPLLFSLSNVELITEPVLDSGITEPKSDSGIECDAVSGPGLQETSTIKNFKPEGDNNGSFRGEVQHAEFSTLEERGNLPAELLSPFSEHDSLFADCNLLSDSEIADDEYMGFGSQTRFSLSELLHLDNSSQFEEADAPGDLSGFSKNSCTLDVPEKCATASLQNNWRPTISSIVHNCFQCSQSEPAPDLSCQICGMWIHSQCSPWIESPSRLGDWRCGNCREWL 1641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02196 1641 ProSiteProfiles DDT domain profile. 180 240 IPR018501 -
Car01g02196 1641 Pfam PHD-finger 392 434 IPR019787 -
Car01g02196 1641 CDD PHD_SF 1594 1637 - -
Car01g02196 1641 Pfam DDT domain 182 237 IPR018501 -
Car01g02196 1641 PANTHER PHD FINGER FAMILY PROTEIN 15 1638 - -
Car01g02196 1641 ProSitePatterns Zinc finger PHD-type signature. 392 433 IPR019786 -
Car01g02196 1641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 379 457 IPR013083 -
Car01g02196 1641 SMART PHD_3 1593 1638 IPR001965 -
Car01g02196 1641 SMART PHD_3 1304 1352 IPR001965 -
Car01g02196 1641 SMART PHD_3 391 434 IPR001965 -
Car01g02196 1641 SMART PHD_3 1143 1192 IPR001965 -
Car01g02196 1641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1294 1365 IPR013083 -
Car01g02196 1641 MobiDBLite consensus disorder prediction 1 18 - -
Car01g02196 1641 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 15 1638 - -
Car01g02196 1641 SUPERFAMILY FYVE/PHD zinc finger 1300 1358 IPR011011 -
Car01g02196 1641 MobiDBLite consensus disorder prediction 1375 1397 - -
Car01g02196 1641 SUPERFAMILY FYVE/PHD zinc finger 377 437 IPR011011 -
Car01g02196 1641 CDD PHD_SF 1304 1351 - -
Car01g02196 1641 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 295 327 IPR028942 -
Car01g02196 1641 SMART testlast3 180 240 IPR018501 -
Car01g02196 1641 ProSiteProfiles Zinc finger PHD-type profile. 389 436 IPR019787 -
Car01g02196 1641 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02196 Car-Chr1 47726166 47734472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02196 270 521 EF-hand Containing Proteins AT5G22760 49.455 6.55e-73 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Car01g02196 DDT 1.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02196 - - gmx:100808614 2141.7