Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02182 ATGGCTGTTGCTGGAGTGCACAATGCAGCTGTGTTGGAGTCTACTTTTTTGAGGGAGTCTCATTCGCAGTCACCACGGAGGCAAGAAGACGGAGGAAGAGGAGGCACACGGTCATCTTCACTCTTGCAAATGTGGCGAGAGATTGAAGATGAGCAGGTGGCGAGACAGATTCAAGGAAGATCTGACGAAGTATTAGTTCAACAAAGGAGTGATGGGTTGGTTTCAGAACCATCATCACAGGAAAGTATGAGTCGTATGACCGAAGATGCAGTTTTGGGTGAGAATGAATCTGAAACATGGTCACAGTCACAGAGTCAGAATGGGTCTCAATATGAACAGGATCAGGAGGAGTTAAACAATTCTAGTCGTGAAAATTCTTCTGATATTGGAGAGATGAGTAGCCAGCAGAGAGGTATTTCTTTTGGGGAAAATAGGGAAGAACAATCTTCTGAAGTTGGTAACCAAGTTGAATGTGTTCGTGATGGATTGGCTGTCAATCAGAATGAAGGTCAAAGTGAACATATATCACGAAGAAGAATTCGTAAATTACGTGGTCGACAGGTTCTGCTTGATATGCTAAAGAAGGGTGAGATGGAAAGGCAAAGAGAGGTTCAGGAATTGTTGGAACGTCGGGCTGTATCTCATTTTCCCCATCGCAATCGCATTCAGGCCTTGCTTAGAGGCAGATTTTTGAGAAATGATAGACCCGTTGATAATAACAGGTCCACTTCCATTGCAGAAAGTGAATTAGGCTTATTGAGACAAAAACAGACTGTATCATGTCTAAGGGAAGGATTTTCTTTTAGAAAGGACAATTTGGGTTACAGTCAAGCAGCAAGTAACCTATCTGATACCTTATCTGACAGTGATATTGATGTCAATACAATTGAACAAACTGGAGCTACCAGTTCACAAGTGGTCCCCTCTGTACATTCTGAACAGTTAAAGCCTAATAATAATGGAAGTGACAGCCTTGGGATATCATGTGCTCATGAAGAAGAAGAAGAAACAAGAAATTGGGAATCGACTTCCAATATCAGGGTTGAAAGAAGAGATGACACTGCACAAAATGTTGATATAATGCCAACGGGACATACTGGTAATGACCTTACCCAACAAAGCTTGCAAATTGAAGTTACGGTGCATAGCAATATGCAAGAACAAGAACCAAGAGAGGTACATACCGAGCAATTTCTGCTGGGTGATACAACTGGTGATGAAAGCAATGTATCAAATCACCACGACCATGTAGGGGGAAATATTGTTGATAATGGAGACTCGGTTGTATCTGTTTCTCTGGAAAGAGAGGAACATGAAGAAACTATTATTGAAAATGAAGGAAGTAACTGGCATCAAACTAACGAAGAGCGGAGAGATAGCCCCCAGGAAAGTGTGGATGATAATCAGCACAGTAGCACATCAAATGAATGGCCCCAAAACATCTTAGGAAATGATGATGAAGAAAATTCTCGTCTGCAAGAGCAAGTAGAAGCCTCTGAAGTGTGGCAAGAAGATGGTAGTTTTCAAGAGGCTGTGGAAATTTGGTTGGGAGGGCCTTCTGATAATGAAGTACCTCCAGTTGGTAGAATTCATGGATTCTATTTTCCAGAAGATGACAATGTGTACAGTGTTGAACTCAGGGAACTGCTGAGTAGGAGAAGTGTCTCAAACCTCTTACGCAGCAGTTTTCGTGAAAGTCTTGACCAGTTGATACAATCATATGTTGAAAGGCAGGGTCATGCTCATGTTGAGTGGGAGCTGCAAGAAACAACCCCTTCTTCTTCGTCAACAGAACAGGACCTGGAGCAGCAGAGAAGTGATCAGATTGTTGGTCCGGAGGACAATGTCAATAGTTCACTTAACCCGCCTTTACCACCAACTCCTCCCCCACTCCCTCTATGGGATCGTCACTCACGTCATCCAAATTGGTCACAAAATGACATAAATAATCAGCGCGCAGGAACTGTGCATTCATTTTCAGGACACACCCGCTTTCCCTTAGCTGATGAGTGGGATAGTATTAGTGACTTGAGAATTGACATGGTTAGGCTACATCAAAGAATGAATAATATGCAGAGAATGCTAGAGGCCTGTATGGATATGCAGCTTGAGTTGCAACGCTCAATAAGACAAGAAGTTTCCGCAGCCCTTAATCGCTCAACTGGTTCATCAGGAGTTCATGACCATGTTTCACCAGACGATAAATCTAAATGGGAATGTGTGAGGAATGGACTTTGCTGTATATGCTGCGAAGGCACTATTGATTCTTTGTTGTACAGATGTGGCCACATGTGCACATGTTCAAAATGTGCAAATGAATTACTCGATAGTAGGAAAAAGTGTCCAATGTGTCGAGCACCAGTGGTAGAAGATCTCAGCAAGTTTTATCTCCTGGCGTATCCAGGTAACAATTAG 2415 0.4269 MAVAGVHNAAVLESTFLRESHSQSPRRQEDGGRGGTRSSSLLQMWREIEDEQVARQIQGRSDEVLVQQRSDGLVSEPSSQESMSRMTEDAVLGENESETWSQSQSQNGSQYEQDQEELNNSSRENSSDIGEMSSQQRGISFGENREEQSSEVGNQVECVRDGLAVNQNEGQSEHISRRRIRKLRGRQVLLDMLKKGEMERQREVQELLERRAVSHFPHRNRIQALLRGRFLRNDRPVDNNRSTSIAESELGLLRQKQTVSCLREGFSFRKDNLGYSQAASNLSDTLSDSDIDVNTIEQTGATSSQVVPSVHSEQLKPNNNGSDSLGISCAHEEEEETRNWESTSNIRVERRDDTAQNVDIMPTGHTGNDLTQQSLQIEVTVHSNMQEQEPREVHTEQFLLGDTTGDESNVSNHHDHVGGNIVDNGDSVVSVSLEREEHEETIIENEGSNWHQTNEERRDSPQESVDDNQHSSTSNEWPQNILGNDDEENSRLQEQVEASEVWQEDGSFQEAVEIWLGGPSDNEVPPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWELQETTPSSSSTEQDLEQQRSDQIVGPEDNVNSSLNPPLPPTPPPLPLWDRHSRHPNWSQNDINNQRAGTVHSFSGHTRFPLADEWDSISDLRIDMVRLHQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSGVHDHVSPDDKSKWECVRNGLCCICCEGTIDSLLYRCGHMCTCSKCANELLDSRKKCPMCRAPVVEDLSKFYLLAYPGNN 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02182 804 MobiDBLite consensus disorder prediction 94 153 - -
Car01g02182 804 MobiDBLite consensus disorder prediction 402 492 - -
Car01g02182 804 MobiDBLite consensus disorder prediction 619 635 - -
Car01g02182 804 CDD mRING-HC-C3HC5_NEU1 746 785 - -
Car01g02182 804 PANTHER PROTEIN, PUTATIVE-RELATED 1 131 - -
Car01g02182 804 MobiDBLite consensus disorder prediction 62 153 - -
Car01g02182 804 Pfam Zinc finger, C3HC4 type (RING finger) 743 788 - -
Car01g02182 804 PANTHER PROTEIN, PUTATIVE-RELATED 131 792 - -
Car01g02182 804 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 733 799 IPR013083 -
Car01g02182 804 SUPERFAMILY RING/U-box 734 791 - -
Car01g02182 804 MobiDBLite consensus disorder prediction 15 44 - -
Car01g02182 804 MobiDBLite consensus disorder prediction 588 618 - -
Car01g02182 804 ProSiteProfiles Zinc finger RING-type profile. 746 785 IPR001841 -
Car01g02182 804 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 131 792 - -
Car01g02182 804 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 131 - -
Car01g02182 804 MobiDBLite consensus disorder prediction 71 86 - -
Car01g02182 804 MobiDBLite consensus disorder prediction 466 486 - -
Car01g02182 804 MobiDBLite consensus disorder prediction 588 647 - -
Car01g02182 804 MobiDBLite consensus disorder prediction 430 465 - -
Car01g02182 804 Coils Coil 674 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02182 Car-Chr1 47574063 47585494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02182 746 792 C3H Transcription Factor Family AT3G06140 44.681 1.36e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02182 - - gmx:100804887 974.926