Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02180 ATGGCGAAAGGAACCGACTCGGATGAGTTTATGATGCTTTCTAGGGTTCGTTCTGGTCTCAAAAGAGAGTTTGCATTCGCTATGAAAGCACAATCTGAAATGGATGGTTCATTAGGTCGAACCCGGGCTAGTAAGAACCGGAATGAGACTCCGGTTCAGACATCTCCGTCTGGGAAACGGTTCAGAAAGTCCGGTCCATCGAAGAATGATGAAGATGTTGATGTTTGTGGTGTTATGAGCGAGGAAGAGGCTAAGAGTGATGTTGTTGATCTTGCTAGCGATGATGAACCTAAGAATCATGTTGGAGAAGAATCAAAATCTGTTTTTCTTGATGAGGCAAATGTGAAGAGTGATGTTGTGATTGATGAAGAAGCTCGTTTTAAGGAAGAAGAAGTTATGAATGAAATAGAAATAGAAACTGCAAAAACTTGTGTTATCAAAACCAAAGATGAAACTATAGAGGAAAAGGAAACCCTTAATGTTGAAGAAACCAAAGAGGTAAAAGATACCCTTAAGGTCGAAGAAGCCAAAAAAGAGAAAGTTAAGAAAAAGAAGGTGAAGGTGCATTTAGATAAATCAATGAGAAGGTTTACAAGATCAGCATTGAAACAAAAAGACGACGAAACTAAGATGTTGAGTAATGGGGAAAGAGATAATGTTGTTGGAGTAGATGTTAATGTTGAAAAGGAAAATGTAGGTACACCATTTTTAGGAACTCCAACTCCTATGAAATTGACTAAGTCTGCTTTGAAAAGGTTCCCTGTTAAGCTTAAGGATCTTCTTGCGACGGGGATTCTTGAGGGGTTGCCAGTGAAATATATAAGGGGATTGAAGGCGCGGAGACCTGGAGAAACAGAGGTACGAGGGGTGATTAAAGATGCTGGGGTTTTGTGCTTTTGTGAGGTTTGTAAGGGGATTAAGGTTGTCACACCAACTGTTTTTGAGTTGCATGCTGGTAGTGCTAATAAGCGTCCACCGGAATATACTTACATTGAGAATGGAAAAACCCTTCGTGATGTCATGAATGCCTGTGTGAGTGTTCCATTGGATACATTGGACGAAGTTGTCCAAAAGGTTCTTGGTGACTTCACTATGCAGAAATCTAATATCTGTTTCAATTGCAGAGGGTCAATTTCTAAATCTAGTGAGGGTGTGTCAAAACTAGTATGCAATTTGTGCATGGAGTTGAAAGAGACTCAAGATAACCACCTTCAAACAGAAGCAACATGCAGTAAAAGTATTACCCCAGTAGTTCAACCCAGATTGCCTGAAACAGCTGTGACGCCGAAGTCATTAAAAACTGATATGGTGGATCTGAAGTCATTAAACACTGAAATGGTGGTTCCAGAGTCATTGAACACAGAGATGGTTGTTCCAGAGTCATCAAACACTGAGATGGTGGTTCCAGAGTCATTAAACACACAGATGGTTCCAAAGGCACTGAACAATGGGATGAAGCAGAGTGCATCTCGTGGTAAGAGTCAGGGGAGAATAACTAGAAAGGATCTACGCTTGCATAAGTTGGTATTTGAAGAAGATGTGTTACCAGATGGAACTGAAGTAGCTTATTATTCTCACGGAAAGAAACTATTGGTCGGTTACAAAAAGGGATATGGAATTTATTGTACGTGTTGTGACTCAGAGGTTAGTGCCTCACAGTTTGAAGCTCATGCTGGCTGGGCATCTCGACGCAAGCCTTACCTGCACATATATACATCTAATGGAGTCTCACTACATGAGTTGTCCCTCTCTCTATCGAAAGATCGGAGATTTTCTGCCAGTGATAATGACGATCTTTGTAGCATATGTCAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCAAGAGCTTTTCACATAGATTGTGTTCCTCTACCATGCATTCCCGAAGATACTTGGTATTGTAAATATTGCCAGAATAATTTCCTGATGGAGAGTAATGTGGAACGTAATGTGAATGCTCTGGCAGCTGGAAGGATTGCAGGCATTGATCCTTTAGAACAGATAAACCGAAGATGCATTCGCATTGTCAAAAGTGTAGCGGTCGACCATGGTGGATGCGCCCTGTGCGGATGTCATGATTTCGTTAAATTATTTGGTCCTCGGACAGTAATTATTTGTGATCAGTGTGAGAAGGAATATCATGTTGGATGTTTGAAGGATCATAACATGCAGAATCTAGAGGAATTGCCGGAAGGGAATTGGTTCTGCAGCACAAGTTGTAGTCAAATTCATTCTGCTTTAGTGAATTTGGTTGCTTCTGGGGAGAATAATCTCCCAGATTCTATTCTAAGTTTGATTAAAAAGAAGAATGaagagaaagagaaagagaaagagaaagagaaagaTTTAGACACCGATGTTGCTCCCAAAATTAAATGGAGGGTTTTGAATTGGAAATTAGTTGCATCTGATGAAAATAAGCAATTGTCTGATGAATATAGGCAAGTGCTTTCGAAGGCTGTTTCCATCTTCCATGAGAGGTTTGATCCTATAGTTGATTCTTCCTCTGGCCGTGATTTCATTCCAACAATGCTGTTTGGAAAGAACATCCGCGGACAAGATTTTGCTGGAATGTACTGCGCAGTGCTTACTGTCAACCAAGTTGTTGTTTCTGCGGGAGTATTTCGTGTCTTTGGACCAGATGTAGCAGAACTTCCGTTGGTTGCGACAGTGGCTGAATACCAAGGACAGGGTTACTTCCAATGCTTGTTTTCTTGCATCGAGAGACTACTTGGATCCCTAAGCGTACGAAACCTTGTCCTACCGGCTGCTGATGAAGCTGAATCAATATGGACTAACAAATTTGGGTTTACAAAGCTGGAGCACGAGGAGATAAACAGTTATAAGAAATTTTATCATATGATGATCTTTCAAGGGACCTCAGTACTACAGAAGCCTGTTGCTGCGCCATTGATTACTTCTCAGGAGTCGGTGTAA 2943 0.4071 MAKGTDSDEFMMLSRVRSGLKREFAFAMKAQSEMDGSLGRTRASKNRNETPVQTSPSGKRFRKSGPSKNDEDVDVCGVMSEEEAKSDVVDLASDDEPKNHVGEESKSVFLDEANVKSDVVIDEEARFKEEEVMNEIEIETAKTCVIKTKDETIEEKETLNVEETKEVKDTLKVEEAKKEKVKKKKVKVHLDKSMRRFTRSALKQKDDETKMLSNGERDNVVGVDVNVEKENVGTPFLGTPTPMKLTKSALKRFPVKLKDLLATGILEGLPVKYIRGLKARRPGETEVRGVIKDAGVLCFCEVCKGIKVVTPTVFELHAGSANKRPPEYTYIENGKTLRDVMNACVSVPLDTLDEVVQKVLGDFTMQKSNICFNCRGSISKSSEGVSKLVCNLCMELKETQDNHLQTEATCSKSITPVVQPRLPETAVTPKSLKTDMVDLKSLNTEMVVPESLNTEMVVPESSNTEMVVPESLNTQMVPKALNNGMKQSASRGKSQGRITRKDLRLHKLVFEEDVLPDGTEVAYYSHGKKLLVGYKKGYGIYCTCCDSEVSASQFEAHAGWASRRKPYLHIYTSNGVSLHELSLSLSKDRRFSASDNDDLCSICQDGGDLLCCDGCPRAFHIDCVPLPCIPEDTWYCKYCQNNFLMESNVERNVNALAAGRIAGIDPLEQINRRCIRIVKSVAVDHGGCALCGCHDFVKLFGPRTVIICDQCEKEYHVGCLKDHNMQNLEELPEGNWFCSTSCSQIHSALVNLVASGENNLPDSILSLIKKKNEEKEKEKEKEKDLDTDVAPKIKWRVLNWKLVASDENKQLSDEYRQVLSKAVSIFHERFDPIVDSSSGRDFIPTMLFGKNIRGQDFAGMYCAVLTVNQVVVSAGVFRVFGPDVAELPLVATVAEYQGQGYFQCLFSCIERLLGSLSVRNLVLPAADEAESIWTNKFGFTKLEHEEINSYKKFYHMMIFQGTSVLQKPVAAPLITSQESV 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02180 980 MobiDBLite consensus disorder prediction 63 103 - -
Car01g02180 980 MobiDBLite consensus disorder prediction 31 103 - -
Car01g02180 980 Pfam Tify domain binding domain 289 344 IPR032308 -
Car01g02180 980 Pfam Tify domain binding domain 533 581 IPR032308 -
Car01g02180 980 Gene3D - 797 967 - -
Car01g02180 980 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 586 662 IPR013083 -
Car01g02180 980 PANTHER AUTOIMMUNE REGULATOR 1 968 - -
Car01g02180 980 ProSiteProfiles Zinc finger PHD-type profile. 597 642 IPR019787 -
Car01g02180 980 Coils Coil 765 788 - -
Car01g02180 980 Pfam PHD-finger 600 641 IPR019787 -
Car01g02180 980 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 858 944 IPR016181 -
Car01g02180 980 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 682 745 IPR013083 -
Car01g02180 980 Coils Coil 164 184 - -
Car01g02180 980 SMART PHD_3 690 743 IPR001965 -
Car01g02180 980 SMART PHD_3 599 640 IPR001965 -
Car01g02180 980 ProSitePatterns Zinc finger PHD-type signature. 600 639 IPR019786 -
Car01g02180 980 MobiDBLite consensus disorder prediction 37 62 - -
Car01g02180 980 CDD PHD1_AIRE 599 639 - -
Car01g02180 980 PANTHER AUTOIMMUNE REGULATOR 1 968 - -
Car01g02180 980 SUPERFAMILY FYVE/PHD zinc finger 684 740 IPR011011 -
Car01g02180 980 SUPERFAMILY FYVE/PHD zinc finger 587 640 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02180 Car-Chr1 47549767 47556238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02180 250 969 PHD Transcription Factor Family AT2G36720 45.726 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car01g02180 TDBD 1.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02180 - - gmx:100803825 1150.58