Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02178 ATGATTTCAAATTCAACACAATCAAGCTTTGAAAGGGAGCATGTAGATCAAGGTCTACAAATGCTTCCTATGGTCACAGAAGATTTGATGCCATTACCAACATCAATGGAAGGAATTTCATTATCATCATTACCTTCCAATTCCCTTCTCTTTAATCTCTCTATTCTCAAAGACAAGCTCAATCAAGTGCAAACTTTTGTTGATGTTATTCTCTCCCCAAATCAACAAGACTCAACTAATTCAATAATATCAACCATGAACTCTACTATACAAGAAATCATAGTGACTGCCACATCAATCATGTTCACTTGCCAACACATGGCTCTTACTTTCCCTCAAGGTACTACTATTACTCCATGCACCAATCAAGAATTGCTAGAGAAAAATTCTAATAGTATTCATCACTCAAACTTTGGTAATATTAACACAAGCATAGATCTAAGAGGTCAAAGCTTATTTTCTAATGATGATCAATCACAACCATTGGATTGGTTTAGTGAAAGCTATAATAGTAACATTAATTATAAGATCAAGGAGGATGATCAAAGAGTTGAAATTAGTGAAACCAGTATAAAAGGTTCAGATGAAACTATGTCTCCAAAGATTATATGTAGTCATGACGATAATATAAACCTAAAATTTGGTCCGTCTTATATTTGGGTCGGCCCTGATTGTGAAGATGATATAGTCGAATTGGATGCGACAGATTTATTGGCTAAGTACACACATTATTGTAAAGTTTGTGGAAAAGGGTTTAAGAGAGATGCAAATTTACGGATGCATATGAGAGCACATGGAGATGAGTACAAGAGTAGCGCATCATTGAGCAATCCAATGAACAAGAATAGAGAAAATTATTTGATTAGTATGAAAAACAAAAAATATTCATGTCCTCAAAAAGGGTGTAGATGGAATCAAAAGCATGTCAAGTTTCAACCATTGAAATCATTGATATGTGCTAAGAATCATTACAAGAGAAGTCATTGTCCTAAAATGTATGTGTGCAAGAGGTGTAATATGAAGCAATTCTCTGTTCTTTCTGATTTGAGGACACATGAGAAGCATTGTGGAGATCTTAGGTGGCAATGCTCATGTGGCACTAACTTTTCTAGGAAAGATAAACTAATGGGCCATGTTGGTTTGTTTGTGGGACACCACCCGGTTATCAATGGCTTGTCATTTAGTACTCACACAAATTAA 1200 0.35 MISNSTQSSFEREHVDQGLQMLPMVTEDLMPLPTSMEGISLSSLPSNSLLFNLSILKDKLNQVQTFVDVILSPNQQDSTNSIISTMNSTIQEIIVTATSIMFTCQHMALTFPQGTTITPCTNQELLEKNSNSIHHSNFGNINTSIDLRGQSLFSNDDQSQPLDWFSESYNSNINYKIKEDDQRVEISETSIKGSDETMSPKIICSHDDNINLKFGPSYIWVGPDCEDDIVELDATDLLAKYTHYCKVCGKGFKRDANLRMHMRAHGDEYKSSASLSNPMNKNRENYLISMKNKKYSCPQKGCRWNQKHVKFQPLKSLICAKNHYKRSHCPKMYVCKRCNMKQFSVLSDLRTHEKHCGDLRWQCSCGTNFSRKDKLMGHVGLFVGHHPVINGLSFSTHTN 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02178 399 ProSitePatterns Zinc finger C2H2 type domain signature. 245 265 IPR013087 -
Car01g02178 399 PANTHER OS08G0562300 PROTEIN 14 394 - -
Car01g02178 399 SUPERFAMILY beta-beta-alpha zinc fingers 241 268 IPR036236 -
Car01g02178 399 ProSiteProfiles Zinc finger C2H2 type domain profile. 243 270 IPR013087 -
Car01g02178 399 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 14 394 IPR044300 GO:0010044|GO:0010447
Car01g02178 399 SMART c2h2final6 243 265 IPR013087 -
Car01g02178 399 SMART c2h2final6 295 328 IPR013087 -
Car01g02178 399 SMART c2h2final6 333 355 IPR013087 -
Car01g02178 399 Gene3D Classic Zinc Finger 224 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02178 Car-Chr1 47546019 47547499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02178 48 388 C2H2 Transcription Factor Family AT5G22890 45.628 1.76e-98 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car01g02178 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02178 - - gmx:100802769 424.861