Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02177 ATGGAAGGAATAGGCGGCATCGAGGAACATGTTAGCGATGCCACCCACCTCGTCAAAGGAAAGCGCACGAAACGACGGTTAAGGTCGTTGTCTCCTTACACCGTGGTAACAACCACGGTGATTTCAAGCTGCTCAAGCGCTACCGGCGATAATATTGGTGGTGGATCGTTTTCATCCACCACCTTTGAAGGCATCGACCAAGAAGAGGAAACTGACATGGCGAATTGTTTGATTCTCTTAGCTCAAGGAAGAGTCGGAAGAGAACAAGAAAATAATAAACGGCGTCTTCAGAACCACCAACAACAAAGTGAAAATCATGTGGACGGTTACGGTTATAACAAGATAACTGAAAAGGCAACAAAAAACGGTTATGATATTTATGAGTGCAAAACTTGTAACCGTTCATTTCATTCATTTCAAGCGTTGGGTGGGCACAGAGCAAGTCACAAGAAACCCAAGATGAAAGAGGAAAAAAATTCATGTGAAATTGATGAAGCAAATAAGCATAACCACACCAAGAAAAATAGTATTAATATTAGCCCTATGGTTCCTCCGGTTTCGCTTGAATTAAGGTGTGGTGTTAATATCAACTTCAACGGCCATGGGAATGATAAGAAGCCCAATAGGCCCAATAAGATTCATGAATGTTCGATTTGTGGAGCTGAATTTACATCTGGTCAGGCATTGGGTGGTCACATGAGGAGACACAGGGCTTCTATcaataacaatacgaaccaccacaacaacaacaaAGTTGGTGTTCATGTTAAGTCTAGGAATGTTCTAGAATTGGATCTTAATCTTCCGGCACCGGAGAATGATATCCAGGATTCGACGTTTCAATTTCCGGTGGTGACGGCTTCTCCGGCATTGGTGGGTTGCCATTATTAG 891 0.4153 MEGIGGIEEHVSDATHLVKGKRTKRRLRSLSPYTVVTTTVISSCSSATGDNIGGGSFSSTTFEGIDQEEETDMANCLILLAQGRVGREQENNKRRLQNHQQQSENHVDGYGYNKITEKATKNGYDIYECKTCNRSFHSFQALGGHRASHKKPKMKEEKNSCEIDEANKHNHTKKNSINISPMVPPVSLELRCGVNINFNGHGNDKKPNRPNKIHECSICGAEFTSGQALGGHMRRHRASINNNTNHHNNNKVGVHVKSRNVLELDLNLPAPENDIQDSTFQFPVVTASPALVGCHY 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02177 296 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 11 296 - -
Car01g02177 296 ProSitePatterns Zinc finger C2H2 type domain signature. 216 236 IPR013087 -
Car01g02177 296 SUPERFAMILY beta-beta-alpha zinc fingers 126 236 IPR036236 -
Car01g02177 296 SMART c2h2final6 127 149 IPR013087 -
Car01g02177 296 SMART c2h2final6 214 236 IPR013087 -
Car01g02177 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 236 IPR013087 -
Car01g02177 296 PANTHER ZINC FINGER PROTEIN ZAT5 11 296 - -
Car01g02177 296 Pfam C2H2-type zinc finger 214 238 - -
Car01g02177 296 Pfam C2H2-type zinc finger 127 152 - -
Car01g02177 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 127 154 IPR013087 -
Car01g02177 296 ProSitePatterns Zinc finger C2H2 type domain signature. 129 149 IPR013087 -
Car01g02177 296 Gene3D Classic Zinc Finger 196 264 - -
Car01g02177 296 Gene3D Classic Zinc Finger 110 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02177 Car-Chr1 47532583 47533473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02177 6 296 C2H2 Transcription Factor Family AT2G28200 39.252 1.48e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car01g02177 zf-C2H2_6 1.6e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02177 01 47532583 47533473 Car06g03424 06 64312729 64313862 PCT