Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02175 ATGGACGAAATGAATGTTCACCAAGACTCACTAGAGTACACCAATAATTTTGAGCTACACGATTTTGTCGACGATCCAAACTTCGATCAATTTATCGATTTAATTCGAGGGGAGAATGAAGATGCAATATGTAACTTCGGTTCTAACCTTATCAATGATTGCTTCATTGATAATCATCACCTTATTTCAAGTCCTATAAACCCATTATTTGATCACaatattaatatcaataataataataataataataTTGTGAATGTGTATGATCCAAGGTGTACCACAATTTCCTCTTTGTCTTGTTTTGATGGAGAGATAAAGGGAGAAGGAGAGGAATCTTCAGGAACAACAAATAATGTTGATGGAAAATCTAGGGCTAAAAGTGATAGATCCAAGACTCTCATTTCGGAGAGAAGGAGGAGAGGTAGAATGAAGGATAAGCTTTATGCATTGCGTTCTTTGGTTCCCAACATTACTAAGATGGATAAGGCCTCTATAATTGGAGATGCAGTATCATATGTGCATGACCTTCAAGCACAAGCTAGGAAGTTGAAGGCTGAGGTTTCAGGACTTGAAGCATTATCAGTCACTAATAATTATCAAGGATCAATTAACAACACCATTAATGTTCAATTCACTCATAACAACTATCCCATTTCCATGAAAATTTTACAGATTGACATGTTTCAAGTGGAAGAAAGAGGGTATTATGCAAAAATATTATGCAATAAAGGAGAAGGGGTAGCTGCTTCTCTTTACAAGGCTCTTGAGTCTCTTGCAAATTTTAATATTCAAAATTCAAACTTGGCTACACTTAATGACAATTTTCTACTTACATTTACATTGAATGTAGAAGGTTCTGAACCAGAAATTAATCTTCAAAATTTGAAGCTATGGGTGGCTGGTGCTCTTTTGAACCAAGGCTTTGAATTCATGCCATCCTTTCATACTTGA 951 0.3481 MDEMNVHQDSLEYTNNFELHDFVDDPNFDQFIDLIRGENEDAICNFGSNLINDCFIDNHHLISSPINPLFDHNININNNNNNNIVNVYDPRCTTISSLSCFDGEIKGEGEESSGTTNNVDGKSRAKSDRSKTLISERRRRGRMKDKLYALRSLVPNITKMDKASIIGDAVSYVHDLQAQARKLKAEVSGLEALSVTNNYQGSINNTINVQFTHNNYPISMKILQIDMFQVEERGYYAKILCNKGEGVAASLYKALESLANFNIQNSNLATLNDNFLLTFTLNVEGSEPEINLQNLKLWVAGALLNQGFEFMPSFHT 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02175 316 MobiDBLite consensus disorder prediction 107 132 - -
Car01g02175 316 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 13 312 - -
Car01g02175 316 Gene3D - 118 192 IPR036638 GO:0046983
Car01g02175 316 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 13 312 - -
Car01g02175 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 125 192 IPR036638 GO:0046983
Car01g02175 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 176 IPR011598 GO:0046983
Car01g02175 316 Coils Coil 173 193 - -
Car01g02175 316 SMART finulus 133 182 IPR011598 GO:0046983
Car01g02175 316 Pfam Helix-loop-helix DNA-binding domain 134 177 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02175 Car-Chr1 47491710 47493830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02175 4 308 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 49.846 6.71e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car01g02175 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02175 - - gmx:100805451 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02175 01 47491710 47493830 Car06g03426 06 64331870 64334581 PCT