Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02171 ATGGCTGAGAGAATTTGCATATGTGATGAAGACAAGAGTGAAGGTAGTAGCAGTATCGACGCGAAACCCTCTTCTGCAAGTCGAAGAAAATGTTCCTTCTTCGACTTAAACGAAGAGGTGGTGGATGATGGAGATGACAATGAAATGATACTAATTAGTGATAGCCATTGTGGTGAGATAATTAGCAACAATGACATATCATCACAAGAAGAGAATTTGAGTAGCaataataataataataatTGTAGTGAAGAAGGAAAAGGGCGTGGAAGTACGGTTAGGCAATATGTTAGGTCCAAAATGCCTAGGCTTCGTTGGACTCCTGATCTTCATTTAGCTTTTGTGCATGCTGTTGAGAGGCTTGGAGGACAAGAAAGAGCAACTCCAAAGTTGGTTCTCCAGTTGATGAATGTAAGAGGACTTAGCATTGCACATGTGAAGAGTCATTTGCAGATGTATCGAAGTAAAAAGCTTGATGCGTCCGGCCAAGTTTTATCCCAAAAAAGGACAATACAAGGAAGACATCATCACATTTTGGATATGTATGGAAGATTTAATGTAGAAGGACAGTTTGGGGTTGACAATAATTATTTGAACCCATCGTCTCCACTAATGAAACAACCATATAATGAAATCAAAGATCACGGCGCTTCAAGATTTCATCAGAGTGGACTTTTCAACAATCACATGATCTTAAGATCAAGTTCAGGGTGGGACAAAGATTTCTATAAGACAAGTTCTCATCTATTTGATGTAAAGGATGCAATAACAAGAAATAATGGAAGCCAAGTAAGGCAATTACTACCTCAAGGAAGTGAAAATCAAGAATTTATAAGTTTATCTAAGGATGGCCATAATGCACAACATTTTCCATGGAGCACCTATTCTAACTCTATCAATAAACAACATTATCAACCTACTTCATGCAGTCCTGTCTTCAAGATGTTTGGTGCCGAGGTACATGATAAAAAAGATAAAATGCAAGAATTCATACACCAAACTCAAGTATCAAAGCAAAGTGATGTCAAAGCCCAACTAAAAAGATTGAATGACAAAAAACAATTGCCAAGTTTCCTAGAGCTAAAGCTAAGTCAAAATTCAGAAAATGTCAAGGAAAAGACAAATGTGGATCCAGAAAGTGAACAAGAAACCAATACAATGCTTTCTCTTTCATTGTTCTCTTCCTCATCCTCAAATTCAAAGTGA 1206 0.3698 MAERICICDEDKSEGSSSIDAKPSSASRRKCSFFDLNEEVVDDGDDNEMILISDSHCGEIISNNDISSQEENLSSNNNNNNCSEEGKGRGSTVRQYVRSKMPRLRWTPDLHLAFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDASGQVLSQKRTIQGRHHHILDMYGRFNVEGQFGVDNNYLNPSSPLMKQPYNEIKDHGASRFHQSGLFNNHMILRSSSGWDKDFYKTSSHLFDVKDAITRNNGSQVRQLLPQGSENQEFISLSKDGHNAQHFPWSTYSNSINKQHYQPTSCSPVFKMFGAEVHDKKDKMQEFIHQTQVSKQSDVKAQLKRLNDKKQLPSFLELKLSQNSENVKEKTNVDPESEQETNTMLSLSLFSSSSSNSK 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02171 401 MobiDBLite consensus disorder prediction 69 93 - -
Car01g02171 401 Pfam Myb-like DNA-binding domain 104 154 IPR001005 -
Car01g02171 401 PANTHER MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN 59 399 - -
Car01g02171 401 MobiDBLite consensus disorder prediction 380 401 - -
Car01g02171 401 MobiDBLite consensus disorder prediction 69 88 - -
Car01g02171 401 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 102 157 IPR006447 GO:0003677
Car01g02171 401 MobiDBLite consensus disorder prediction 366 401 - -
Car01g02171 401 SUPERFAMILY Homeodomain-like 100 156 IPR009057 -
Car01g02171 401 Gene3D - 101 158 - -
Car01g02171 401 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 158 IPR017930 -
Car01g02171 401 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 59 399 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02171 Car-Chr1 47421406 47427242 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02171 69 181 G2-like Transcription Factor Family AT2G42660 56.637 2.17e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Car01g02171 Myb_DNA-binding 6.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02171 - - mtr:MTR_2g084230 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02171 01 47421406 47427242 Car01g02171 01 47421406 47427242 ECH