Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02169 ATGTCAGGAGTCGGACCTCTTTCTCAAGACTGGGAACCCGTCGTTCTCCGCAAAAAAGCTCCCACCTCCGCCGCCAGAAAGGATGACAAAGCAGTTAACGCAGCTCGACGTTCCGGCGCCGATATTGAAACCATGAAGAAACATAATGCTGGAACAAACAAATCTGCCATTGCCACCACTTCATTGAACACTAAGAGGCTGGATGATGATACAGAGAATTTAGCTCACGATCGTGTCCCAACTGAACTCAAGAAAGCTATAATGCAAGCCCGGATGGACAAGAAACTTACTCAGGCGCAACTTGCTCAAATTATCAATGAGAAGCCTCAAGTGATCCAGGAGTACGAGTCAGGGAAAGCGATTCCAAACCAGCAGATAATTGGCAAGTTGGAGCGAGCTCTTGGTGCCAAACTGCGTGGAAAGAAATAA 429 0.4755 MSGVGPLSQDWEPVVLRKKAPTSAARKDDKAVNAARRSGADIETMKKHNAGTNKSAIATTSLNTKRLDDDTENLAHDRVPTELKKAIMQARMDKKLTQAQLAQIINEKPQVIQEYESGKAIPNQQIIGKLERALGAKLRGKK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02169 142 MobiDBLite consensus disorder prediction 1 56 - -
Car01g02169 142 Pfam Helix-turn-helix 87 137 IPR001387 -
Car01g02169 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 142 - -
Car01g02169 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Car01g02169 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Car01g02169 142 SMART mbf_short4 86 141 IPR001387 -
Car01g02169 142 CDD HTH_XRE 85 135 IPR001387 -
Car01g02169 142 SUPERFAMILY lambda repressor-like DNA-binding domains 80 138 IPR010982 GO:0003677
Car01g02169 142 MobiDBLite consensus disorder prediction 21 48 - -
Car01g02169 142 Gene3D - 71 142 IPR010982 GO:0003677
Car01g02169 142 PANTHER MULTIPROTEIN-BRIDGING FACTOR 1A 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02169 Car-Chr1 47381043 47383521 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Car01g02169 MBF1 9.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02169 K03627 - gmx:100500420 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02169 01 47381043 47383521 Car01g02169 01 47381043 47383521 ECH