Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02166 ATGGCCTCCATGCCGTTGGGGCCGcactaccatcaaccaccgcaaccggcgcctctaccactaccgctaccaccacAAGCCGTGAATGAGCCGATTAAAACGACGGCGGTTAGTGGCGTCTCCGACATGGACACCGATAAGGAAATGTCATCTACTGTTGTTGACAGTAATGATGCAGTCACTGGTCACATAATCTCAACTACCATTGGAGGCAAAAATGGTGAACCAAAACGGACAATCAGTTACATGGCCGAACGTGTTGTTGGCACAGGATCATTCGGAATTGTTTTCCAGGCGAAGTGCTTGGAGACTAGTGAGGCAGTGGCTATAAAGAAGGTTTTGCAAGACAAGCGGTACAAAAATCGTGAACTGCAGTTAATGCGTGTGATGGATCACCCAAATGTAATTTCCTTGAAGCACTGTTTCTTCTCTACAACAAGCAGAGACGAACTTTTTCTGAACTTGGTGATGGAATATGTCCCTGAGACGATGTACCGAGTTCTAAAGCACTACAATAATATCAACCAGAGAATGCCCCTAATCTATGTGAAATTATATACATACCAAATCTTTAGGGGACTAGCATATATCCATACCGTTCCAGGAGTTTGCCATAGGGATGTGAAGCCCCAAAATCTATTGGTTGATCCTCTCACTCACCAAGTTAAACTTTGCGATTTTGGGAGTGCTAAAGTTCTGGTCAAGGGTGAAGCGAACATTTCATACATATGTTCACGATACTATCGGGCCCCAGAACTAATATTCGGTGCGACAGAATATACAACGTCGATTGATATCTGGTCAGCTGGTTGTGTCCTTGCAGAACTTCTTCTAGGCCAGCCCTTGTTCCCAGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATCAAGGTTCTTGGTACTCCAACTCGAGAAGAAATTCGTTGTATGAACCCTAATTATTCTGATTTTAGATTCCCTCAGATTAAAGCCCATCCTTGGCATAAGGTTTTTCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTTCAATATTCACCAAGTCTTCGTTGCAGCGCACTGGAAGCATGTGCACATCCTTTCTTTGATGAGCTTCGAGAGCCCAATGCTCGGCTTCCTAATGGTCGTCCTCTGCCTCCGCTTTTCAACTTTAAACAGGAAGTATGCATCTAG 1185 0.4236 MASMPLGPHYHQPPQPAPLPLPLPPQAVNEPIKTTAVSGVSDMDTDKEMSSTVVDSNDAVTGHIISTTIGGKNGEPKRTISYMAERVVGTGSFGIVFQAKCLETSEAVAIKKVLQDKRYKNRELQLMRVMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETMYRVLKHYNNINQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVKGEANISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYSDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCSALEACAHPFFDELREPNARLPNGRPLPPLFNFKQEVCI 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02166 394 SUPERFAMILY Protein kinase-like (PK-like) 81 388 IPR011009 -
Car01g02166 394 CDD STKc_GSK3 77 369 IPR039192 -
Car01g02166 394 MobiDBLite consensus disorder prediction 9 27 - -
Car01g02166 394 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 33 392 - -
Car01g02166 394 PANTHER OS02G0236200 PROTEIN 33 392 - -
Car01g02166 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Car01g02166 394 MobiDBLite consensus disorder prediction 1 28 - -
Car01g02166 394 Gene3D Transferase(Phosphotransferase) domain 1 162 393 - -
Car01g02166 394 Gene3D Phosphorylase Kinase; domain 1 67 161 - -
Car01g02166 394 SMART serkin_6 82 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02166 394 ProSitePatterns Protein kinases ATP-binding region signature. 88 112 IPR017441 GO:0005524
Car01g02166 394 Pfam Protein kinase domain 82 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02166 394 ProSiteProfiles Protein kinase domain profile. 82 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02166 Car-Chr1 47339382 47344617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02166 86 371 MAP Kinase Gene Family AT3G59790 36.027 4.71e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Car01g02166 Pkinase 2.8e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02166 K14502 - mnt:21393664 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02166 01 47339382 47344617 Car01g02166 01 47339382 47344617 ECH