Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02160 ATGATGTATTGCTCGCACGTCCACAATAAACTACATTGCCAATCTGTCACACCATGGCGGCTCATATTAAACACCAATCCCAATCCCTTCTTTTCTCTCACTTTCACCCTCCTTCTCTCCTCACCACCACCCCTCCCTTCTTTTTCCGGCGACCCCACTTTCCCAATCACCATTTTCTACACTAATCAACTACTCAAAAAATTTATCAACTTTCTTCTATTATTATTACCATTAATCATGTACAAACGTAGATTTAACACCAAACCATTGTATGTCACTGACCCAGATGAGCCCGAGCCCGAACCCATATCGGAAGCTGCCCCTGCTTCTCCTTCTTCTTGTGAAGACACAAAAACTGAAGAACCATCACCCAAGAAAAGGAAGGAGATGAAGAAGAGGGTAGTGACTATACCAATCGGTGAGGTGGAAGGATCTAAAAGCAAAGGAGAGACATATCCACCGTCGGATTCGTGGGCCTGGAGAAAGTACGGCCAAAAGCCCATCAAAGGCTCCCCTTATCCCAGGGGATACTACCGATGTAGCAGTTCAAAAGGGTGTCCCGCTAGGAAGCAAGTTGAAAGAAGCCGTGTGGACCCTACAAACCTCCTCGTCACTTACGCCTACGAACACAACCACCCTCTCCCTCTTCCCAAATCTCATTCTTCTTCCTCCGCCGTAACTGTCACCGTCGAAACTCCCTCCACAGGCGACTCTTCCGCCGAATGCGCCGCCACCACTGTCCATCCCGAGGATCTCACCGTTTTCGCCGCACATCCCGATTTCGAACTAGCCGGCGACTCAACGATTCTTCTCAGTCACCACCACCACGCCGTGTTCGGGTGGTTCGACGACGTGGCATCCACCGGCGTTCTTGTAAGCCCGATCTGCGGAGAAGTGGAGGATCTGACGCTGACGATGAGGGAGGAAGATGAATCGCTGTTTGCCGATCTCGGTGAGTTGCCGGAGTGTTCAGCGGTTTTCCGGCAGAGGAATATTCCGAGTGGGAGTGTGATTCAGTGTGGCGGCATCACAGGATAA 1038 0.5058 MMYCSHVHNKLHCQSVTPWRLILNTNPNPFFSLTFTLLLSSPPPLPSFSGDPTFPITIFYTNQLLKKFINFLLLLLPLIMYKRRFNTKPLYVTDPDEPEPEPISEAAPASPSSCEDTKTEEPSPKKRKEMKKRVVTIPIGEVEGSKSKGETYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTNLLVTYAYEHNHPLPLPKSHSSSSAVTVTVETPSTGDSSAECAATTVHPEDLTVFAAHPDFELAGDSTILLSHHHHAVFGWFDDVASTGVLVSPICGEVEDLTLTMREEDESLFADLGELPECSAVFRQRNIPSGSVIQCGGITG 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02160 345 SMART WRKY_cls 154 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g02160 345 SUPERFAMILY WRKY DNA-binding domain 150 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car01g02160 345 ProSiteProfiles WRKY domain profile. 155 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g02160 345 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 99 334 IPR044810 GO:0003700
Car01g02160 345 Pfam WRKY DNA -binding domain 156 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g02160 345 PANTHER OS01G0750100 PROTEIN 99 334 - -
Car01g02160 345 MobiDBLite consensus disorder prediction 92 131 - -
Car01g02160 345 Gene3D WRKY domain 141 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02160 Car-Chr1 47263587 47267274 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02160 92 332 WRKY Transcription Factor Family AT3G58710 51.172 3.28e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Car01g02160 WRKY 2.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02160 - - cam:101504205 605.134