Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02133 ATGGTTTCCCCGGAAAACACCAATTGGCTTTTTGATTACGCTTTGATGGACGATATTCCCGTCCCTGATGGCTCCTTCAACTTCACGTGGCCCCCACCGGACCCTTCCAATGTTGGTGTTGAAATTGATGGCTCTCTGGGGGATTCTGATGGTATCAAAGATCCTGGTTCGAAGAAGAGGGGTAGATCGGATTCATGTGCTCCTTCCAGCTCTAAGGCGTGTCGAGAGAAGTTGCGGAGGGATAGGCTGAATGACAAGTTTGTTGAATTAGGCTCAATCTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAAGCTGCAATTCTGATTGACGCTGTCCGAATGGTGACACAATTGCGAGGTGAAGCTCAGAAGTTGAAAGCCTCAAATTCAAGTCTTCAAGAGAAGATTAAAGAGTTAAAGGTCGAGAAGAATGAACTCCGTGATGAGAAACAGAGGCTTAAGGCCGATAAAGAGAAGTTGGAGCAGCAGGTGAAATCAATGAATACCCAACCTGGTTTCTTGACACCCCCTCCTGCAATCCCTGCTGCATTTGCTCCACAAGGCCAAGCCCCTAGCAACAAGTTAATGCCTTTCATTAGTTACCCTGGAGTTGCAATGTGGCAATTTGTGCCACCGGCAACCATGGATATCTCACAGGATCATGAACTCCGCCCACCAGTTGCCTAA 687 0.4803 MVSPENTNWLFDYALMDDIPVPDGSFNFTWPPPDPSNVGVEIDGSLGDSDGIKDPGSKKRGRSDSCAPSSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKLKASNSSLQEKIKELKVEKNELRDEKQRLKADKEKLEQQVKSMNTQPGFLTPPPAIPAAFAPQGQAPSNKLMPFISYPGVAMWQFVPPATMDISQDHELRPPVA 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02133 228 CDD bHLH_AtILR3_like 72 147 - -
Car01g02133 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 118 IPR011598 GO:0046983
Car01g02133 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 142 IPR036638 GO:0046983
Car01g02133 228 Coils Coil 115 170 - -
Car01g02133 228 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 228 - -
Car01g02133 228 SMART finulus 73 124 IPR011598 GO:0046983
Car01g02133 228 PANTHER BHLH TRANSCRIPTION FACTOR 1 228 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Car01g02133 228 Gene3D - 70 147 IPR036638 GO:0046983
Car01g02133 228 MobiDBLite consensus disorder prediction 26 78 - -
Car01g02133 228 Pfam Helix-loop-helix DNA-binding domain 71 118 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02133 Car-Chr1 46904392 46907444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02133 1 228 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 68.201 8.56e-109 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car01g02133 HLH 4.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02133 - - ccaj:109815088 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02133 01 46904392 46907444 Car01g02133 01 46904392 46907444 ECH
Car01g02133 01 46904392 46907444 Car06g01903 06 18970866 18975314 PCT