Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02123 ATGAAAGAGGAGTCTACCGGATTAATCATTGGTATTTCCATTGGTGTTGTAATTGGAGTTGTGTTAGCAATTTCTGCATTGATCTGTTTTAGATATCATAGGAAGCGTTCGCAGATAGGGAATAGTAGTTCTCGGAGGGCGGCTACGATACCGATTCGCGCGAATGGTGCTGATTCTTGTACTATTCTATCAGATTCAACCTTAGGTCCTGATTCGCCTGCAAGGTCGGGACGAAATGGCACGAATTTCTGGCTTGATGGATTCAAGAAAAGTAACATGGTTCCTGCATCTGGAATACTTGAATATTCATACAAGGATTTGCAAAAGGCAACATATAATTTTACAACACTCATAGGACAAGGTGCATTTGGTCCTGTATATAAAGCTCAGATGTCTACTGGTGAGACTGTTGCAGTTAAAGTTCTTGCAACCAATTCTAAACAAGGGGAGAAAGAATTTCACACAGAGGTTATGTTGTTGGGAAGGTTACACCATAGAAACCTTGTCAATTTGGTTGGATATTGTGCAGAAAAGGGACAAAATATGCTTATTTATGTCTACATGAGTCAAGGCAGCTTGGCTTCCCACTTGTACAGTGAAGAGAATGGGACACTAGGCTGGGATATGAGAGTTCATGTAGCTTTAGATGTAGCAAGAGGCTTGGAGTATCTTCATGATGGGGCAGTTCCTCCTGTCATCCATCGCGACATCAAATCTTCTAATATTCTCTTGGATCATTCCATGCGTGCCCGGGTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGTGGATAAACATGCAGCTATTCGTGGTACCTTTGGCTATCTTGATCCTGAGTATATATCTTCAGGGACATTCACCAAGAAAAGTGATGTATACAGTTTTGGAGTGTTGCTCTTTGAACTTATAGCCGGCAGAAACCCTCAGCAGGGTCTTATGGAACATGTTGAACTTGCAGCAATGAACAGTGAAGGAAAAGTTGGTTGGGAGGAGATTGTTGATTCTAAACTTGAAGGAAAATGTGATTTCCAAGAGCTGAATGAAGTGGCAGCACTTGCATACAGATGCATCAACCGTGCGCCGAGGAAGCGTCCTTCGATGAGAGACATCGTGCAAGTACTGACTCGGATCCTTAAAGTAAGGCATCAAAGGAATCATCATAAAAAATCGCTTTCGGCCACAGCGGATGAAGTTGCAATTGATGTTGATCAAACAGAAGAAAATAAGGCTTATGTTATTGAACACAAAAGAGATGAATCTATAGATAGTGCAGCTGACATGTATGATTTGTAA 1293 0.4153 MKEESTGLIIGISIGVVIGVVLAISALICFRYHRKRSQIGNSSSRRAATIPIRANGADSCTILSDSTLGPDSPARSGRNGTNFWLDGFKKSNMVPASGILEYSYKDLQKATYNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATNSKQGEKEFHTEVMLLGRLHHRNLVNLVGYCAEKGQNMLIYVYMSQGSLASHLYSEENGTLGWDMRVHVALDVARGLEYLHDGAVPPVIHRDIKSSNILLDHSMRARVADFGLSREEMVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFELIAGRNPQQGLMEHVELAAMNSEGKVGWEEIVDSKLEGKCDFQELNEVAALAYRCINRAPRKRPSMRDIVQVLTRILKVRHQRNHHKKSLSATADEVAIDVDQTEENKAYVIEHKRDESIDSAADMYDL 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02123 430 SMART serkin_6 112 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02123 430 CDD STKc_IRAK 118 377 - -
Car01g02123 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Car01g02123 430 ProSiteProfiles Protein kinase domain profile. 112 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02123 430 Gene3D Phosphorylase Kinase; domain 1 86 187 - -
Car01g02123 430 Pfam Protein tyrosine and serine/threonine kinase 114 374 IPR001245 GO:0004672|GO:0006468
Car01g02123 430 Gene3D Transferase(Phosphotransferase) domain 1 188 402 - -
Car01g02123 430 SUPERFAMILY Protein kinase-like (PK-like) 104 384 IPR011009 -
Car01g02123 430 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 1 5 403 - -
Car01g02123 430 PANTHER OS01G0253100 PROTEIN 5 403 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02123 Car-Chr1 46827800 46833257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02123 24 374 Glycoside Hydrolase AT3G07070 39.459 3.28e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Car01g02123 PK_Tyr_Ser-Thr 2.9e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02123 - - gmx:100799586 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02123 01 46827800 46833257 Car01g02123 01 46827800 46833257 ECH