Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02111 ATGAGACAAGCTGGTGAATATTCAAGTTTACTATGTGGTGGAATGTCAAGAAGAACCGGTCCTCATTCATTACCTTTAGCAAGAATAAAGAAAATAATGAAGAAATCTAATGAGGATGTGAAAATGATATCAGGGGTTGCTCCAATTGTTTTCTCCAAAGCTTGTGAGCTTTTCATTGAAGAACTTACAAAGAGCTCTTGGAACATTGCTATTGATGGTAAAAGACGAACTTTGAATAAAGATGATGTTGCTTCTGCTGTTATAGCCACTGATAACTTTGATTTTTTGATCACTTTGGTTTCTAATTCCAATAGCACTCTCATGGAAATGGAAAATATAACATGA 345 0.3449 MRQAGEYSSLLCGGMSRRTGPHSLPLARIKKIMKKSNEDVKMISGVAPIVFSKACELFIEELTKSSWNIAIDGKRRTLNKDDVASAVIATDNFDFLITLVSNSNSTLMEMENIT 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02111 114 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Car01g02111 114 SUPERFAMILY Histone-fold 18 96 IPR009072 GO:0046982
Car01g02111 114 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 106 - -
Car01g02111 114 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 1 106 - -
Car01g02111 114 Gene3D Histone, subunit A 4 102 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02111 Car-Chr1 46615934 46616278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02111 22 104 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.446 8.15e-31 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Car01g02111 CBFD_NFYB_HMF 5.9e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02111 - - cam:101503561 224.557