Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02108 ATGAAAATTTTTAAAATGCTACTTGTTTTATGCTTTCTTCTATTCCATTTCATACCAAGCTTCAACACCTTACAAACCATTCTTCCAGGACAATCAATCAAAGATAATGAGACACTAATCTCAAAAAATGAATTTTTTGAAGCAGGATTCTTCAACTTTGGAGACACAAATATCCAATATTTTGGTATTTGGTACAAGAAAATTTCACCAAAAACTATTGTGTGGATAGCTAACAGAGACACTCCACTTGAAAACTCATCAAGAGTTTTGAATTTCACTGATGAAGGAACTCTTTTCATTGTTGATTCCACAAAGGGTATAGTATGGTCCTCAAACACATCAAAAAAAACAATAAAAAAACCAATTTTGCAGCTCTTGGAAAATGGAAACCTTGTTGTGAAAAATGAAAACAACCCAGATGATTTTTTGTGGCAAAGTTTTGATCTTCCTGGTGATACTTTGCTTCCAAGTATGAGAATCAGAACAAACAAAGTAACTGGTGAATATACAGGTTTGGTTTCTTGGAAAAATACACAAGACCCTTCTACTGGTTTGTATTCATATCATATAGATATTAATGGTTTTCCTCAAGTTGTTATTACAAAAGGAAACACAATATTGTTTAGAATTGGTTCATGGAATGGAAATATTTTATCAGGAATTCCTTCTGACACACTCTTCAAATCCTTTAACTACTCTTTTGTGATTACTGATAAGGAAGTTTCTTATGGATTTGAACTTTTGAATGAAGCAATTGTTTCAAGATACATGCTTAGTTCGACCGGTCAAGTCACGCGTTACATGTTGTCAGATCGGACAATGATCAGTTGGAACATTTTCTTTGTTGGTCCTTCAGATCAGTGTGATAATTATGCTATATGTGGTGATAATTCTAACTGTGATGTCGGTAACTCGCCGATGTGTGAATGTCTTAAAGGTTTTGTTCCTAAAACTCAAGAAAATGGGAATTTTGGTGGTTGTATTAGGAAGGTGAATTTGGATTGTGATGGCAACAGTGATGGATTTTTGAAGCTTGTGGTAGTGAAGTTGCCTGATACATCAAGATCTTGGTTTGATAAGAATATGAACCTTGAGGAATGTGAGAAATTTTGTTTGAGAAATTGTTCTTGTACAGCATATGCAAATTTAGATATTAGAGATGGTGGAAGTGGTTGCTTGGTTTGGTTTAATAATATTGTGGATGTGAGAAAATTAAGCTCTGGTGGACAAGATCTTTACATAAGAGTTGCAGCTTCTGAACTAGACCATAACAATGGCTTGAACAAGAAGAAGCTTGCAGGAATTCTAGTAGGCTGTATTATGTTTACTGTGATCATGATAATACTTGGACTGGCCATACATCGGGTTCAGAGGAAGAAAGTAAAGAAGCAAGGGAAGAACCAAGTATTTAGCTTGAAGAATCACAGTGACAACAAAGAGAATGAAGACATTGACATACCAATATTTGATTTATCAACCATAGCTAATGCAACCAATGACTTCTCCATTGATAACAAATTGGGGCAAGGAGGATTTGGACCAGTTTACAAGGGTATATTGGAAAATGGACAAGATATAGCTGTGAAGAGGCTTTGCAACACCTCAGGGCAAGGACCAAAGGAGTTCATAAATGAAGTTAAACTAATTGCCAATCTTCAACACAGAAATCTGGTGAAACTGCTTGGCTGTTGCATTCAAGATGATGAAAAACTTTTGATGTATGAATTCATGATCAACAGAAGCTTGGACTACTTTATATTTGGTTTGATATTTTATCCTATATATATCACTTGTTTTGACTTTATGTACCTTGATCAACAAGTTATCTTCTTCTAA 1836 0.3459 MKIFKMLLVLCFLLFHFIPSFNTLQTILPGQSIKDNETLISKNEFFEAGFFNFGDTNIQYFGIWYKKISPKTIVWIANRDTPLENSSRVLNFTDEGTLFIVDSTKGIVWSSNTSKKTIKKPILQLLENGNLVVKNENNPDDFLWQSFDLPGDTLLPSMRIRTNKVTGEYTGLVSWKNTQDPSTGLYSYHIDINGFPQVVITKGNTILFRIGSWNGNILSGIPSDTLFKSFNYSFVITDKEVSYGFELLNEAIVSRYMLSSTGQVTRYMLSDRTMISWNIFFVGPSDQCDNYAICGDNSNCDVGNSPMCECLKGFVPKTQENGNFGGCIRKVNLDCDGNSDGFLKLVVVKLPDTSRSWFDKNMNLEECEKFCLRNCSCTAYANLDIRDGGSGCLVWFNNIVDVRKLSSGGQDLYIRVAASELDHNNGLNKKKLAGILVGCIMFTVIMIILGLAIHRVQRKKVKKQGKNQVFSLKNHSDNKENEDIDIPIFDLSTIANATNDFSIDNKLGQGGFGPVYKGILENGQDIAVKRLCNTSGQGPKEFINEVKLIANLQHRNLVKLLGCCIQDDEKLLMYEFMINRSLDYFIFGLIFYPIYITCFDFMYLDQQVIFF 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02108 611 ProSiteProfiles PAN/Apple domain profile. 335 417 IPR003609 -
Car01g02108 611 Gene3D - 21 147 IPR036426 -
Car01g02108 611 CDD PAN_AP_plant 331 417 - -
Car01g02108 611 SMART ntp_6 337 416 IPR003609 -
Car01g02108 611 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 14 588 - -
Car01g02108 611 SUPERFAMILY Protein kinase-like (PK-like) 475 593 IPR011009 -
Car01g02108 611 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544
Car01g02108 611 Pfam PAN-like domain 335 402 IPR003609 -
Car01g02108 611 CDD B_lectin 31 150 IPR001480 -
Car01g02108 611 Gene3D Hepatocyte Growth Factor 335 414 - -
Car01g02108 611 ProSiteProfiles Protein kinase domain profile. 501 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02108 611 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 14 588 - -
Car01g02108 611 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
Car01g02108 611 SMART blect_4 30 150 IPR001480 -
Car01g02108 611 ProSiteProfiles Bulb-type lectin domain profile. 24 146 IPR001480 -
Car01g02108 611 Pfam Protein tyrosine and serine/threonine kinase 502 586 IPR001245 GO:0004672|GO:0006468
Car01g02108 611 Gene3D Phosphorylase Kinase; domain 1 474 576 - -
Car01g02108 611 Pfam D-mannose binding lectin 72 176 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02108 Car-Chr1 46586496 46590772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02108 424 587 Receptor kinase-like Gene Family AT4G23190 44.512 3.99e-37 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Car01g02108 S_locus_glycop 1.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02108 - - ccaj:109805721 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02108 01 46586496 46590772 Car01g02108 01 46586496 46590772 ECH