Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02102 ATGACTAACAAGAGTACTTCTAGTGAAAACCATGGATTGAAGAAAGGTCCATGGACTCCAGAGGAAGATCAGAAATTGGTTGATTATATTCAGAAATATGGATATGGAAAATGGAGAACCCTTCCCAAAAACGCAGGATTAAAAAGATGTGGAAAAAGTTGTCGGCTTCGTTGGACAAATTACTTGAGGCCTGATATTAAGAGAGGAAGATTTTCATTGGAAGAAGAAGAAGTTATTATCCAATTACACAGTGCTTTGGGAAATAAGTGGTCTACAATTGCTGCTAACTTGCCAGGAAGAACTGATAACGAAATCAAGAATTATTGGAACACTCACATCAAGAAAAAACTAATGAAGATGGGGATTGATCCAGTGACTCACACACCACGCCTTGATATTCTACAACTTGCCTCCATTCTTAACTCATCTTTACACAATTCACCCCAATTTAACAACCTTGATCATTTTAGTTTGGGAAGAGTGGAAAATCCAAACCATCTTTACATTCTAAATTTGCTCACTACTCTCCTATCATGTCAAAACAAAAACCTAAATGATTCAAATTATAATGTCCATCAAAACCAATCTAGTGGTAATGATAATAATTACTCTAATTCGTTGCAACAACTTCAAAATCCACAATTTAAAATTACGATGGAGTCTCCATTAATGAAAACAAAATTAATGAATCAAATAGCTCCAATTGCTACATCTTTCAGCAATATACAACAACCCAAGTCGTCAACAATCAACAATATTTTAGAAAATCAGATTTTATCTAACATTGAGGAAATGCCAAATTTCGATTTAAGCTCACTTTTTTCTACGTCACCTTCACCTTCTAGCCCGAGTAATTTGAAATCACAATCTTCAACAACATTTGTCAATGGAACCATTGAAGGTGAGAGATACACTTATGACAACAACAACTTTATGATGTATAACACATCTCAAATGGTTTGA 963 0.3437 MTNKSTSSENHGLKKGPWTPEEDQKLVDYIQKYGYGKWRTLPKNAGLKRCGKSCRLRWTNYLRPDIKRGRFSLEEEEVIIQLHSALGNKWSTIAANLPGRTDNEIKNYWNTHIKKKLMKMGIDPVTHTPRLDILQLASILNSSLHNSPQFNNLDHFSLGRVENPNHLYILNLLTTLLSCQNKNLNDSNYNVHQNQSSGNDNNYSNSLQQLQNPQFKITMESPLMKTKLMNQIAPIATSFSNIQQPKSSTINNILENQILSNIEEMPNFDLSSLFSTSPSPSSPSNLKSQSSTTFVNGTIEGERYTYDNNNFMMYNTSQMV 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02102 320 Gene3D - 70 117 - -
Car01g02102 320 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Car01g02102 320 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Car01g02102 320 SMART sant 67 115 IPR001005 -
Car01g02102 320 SMART sant 14 64 IPR001005 -
Car01g02102 320 Gene3D - 12 68 - -
Car01g02102 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Car01g02102 320 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 296 - -
Car01g02102 320 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Car01g02102 320 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Car01g02102 320 PANTHER MYB DOMAIN PROTEIN 49 1 296 - -
Car01g02102 320 MobiDBLite consensus disorder prediction 273 292 - -
Car01g02102 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Car01g02102 320 CDD SANT 70 113 IPR001005 -
Car01g02102 320 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Car01g02102 320 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02102 Car-Chr1 46476600 46479347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02102 4 185 MYB Transcription Factor Family AT4G21440 68.750 6.73e-89 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car01g02102 Myb_DNA-binding 2.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02102 K09422 - gmx:547460 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02102 01 46476600 46479347 Car01g02102 01 46476600 46479347 ECH