Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02098 ATGGCACCCGACCAACGCGCGATTAATTCACACATGCAACAACACTACTACTacaacaacaccgacaacgacaacgacagcgacgacgacaacgaGGTTGTTAGCGACATCGACGATGATCTCACATACGAAGAAAGAAAAGGAGAaataaaaaccaaagacgacaacaacaacaataacaaTGATGTTTTCGGAGGTTCGCGGTTAAAAGAACGTTGTTCATTTTCATTGGGTCGGGTATTATTCGACCCGAGAGGAAAATGGGTTGAAGAATGGAACAGGGTATTTCTTTTGGTGTGTGCGATGGGATTATTTGTGGACCCATTATTTTTTTACGCGCTGTCAATAAGTGACACGTGTATGTGTTTGTTCGTAGACGGTTGGTTACTGGTTACCGTCACCGTTATCCGTTGCATGACGGACGCGTTACACCTCTGGAATATTTGGTTGCAGTTCTATATACACAGACGCTCCTCCTTTGGCTtcattcatcatcatcgtcatcatacttcacatgctcttcatTACTTCAAACACAACAAAGCTTTTCTGTTTGACATTTTTGTCCTCCTACCTCTTCCTCAGATTGTGTTATGGGTGACAATTCCATCACTATTGGAGAAAGGATCAATACCGCTGTTGATGACAATATTGTTGATCATGTTTTTGTTTCAATACCTTCCTAAAATTTATCACTCAGTTTGCTTTGTACGTCGCAATCTCTCTGGTTACACTTTCGGAACCGTTTGGTGGGGATTCGCTCTTAACATGATCGCTTATTTTGTCGCTTCCCATGCAGCAGGGGCATGTTGGTATTTGTTGGGACTTCAAAGGGCAGCAAAGTGTCTAGAAGAGCAATGTGTGAATACATCAGGTTGTGGTATGAGAACATTGTGTTGCAAAGAACCTATATACTATGGAAGCAATAGCATGGTGAAGAAATTAGAGAGAACAAGGTTGGTATGGGCACAGAACAGAGAAGCAAGGTCTACATGCTTAACTAGTGCTGATAACTATGATTATGGAGTTTATGAATGGAGTGTTCAACTTGTAACAAATGATAGCCGATTGGAAAAAATACTCCTCCCTATCTTTTGGGGTCTAATGACTCTAAGCACATTTGGGAACCTCCAGAGCACAACGGAAAGGATGGAAGTGGTTTTCAACATTATTGTATTGACTAGTGGCCTCCTTCTAGTCACTATGCTAATTGGAAACATCAAGGTATTTTTACATGCTACAACATCAAAGAAGCAAGTGATGAGATTGAAGATGACAAACATTGAATGGTGGATGAGGAAAAGACAGCTGCCACAAGGGCTCCGACAACGTGTGCGTAACTACGAGCGACAACGTTGGGCTGCTATGCGTGGTGTTGATGAATGTCAGTTGATAAAAAATCTCCCCGAGGGTTTGAGAAGGGACATCAAGTACCATCTTTGTTTGGGTTTGGTGAGACAGGTGCCACTATTTCAACACATGGATGAATTGGTGCTAGAGAACATTTGTGACCGTGTGAAGTCCCTTGTATTTACAAAGGGAGAAACATTAACTAGAGAGGGAGACCCAGTTCAAAGAATGTTATTTGTGGTAAGGGGTCACCTTCAAAGTAGCCAAGTCCTAAGAGATGGAGTAAAAAGTTGTTGCATGTTAGGTCCAGGAAATTTTAGTGGAGATGAGCTTCTATCATGGTGTTTAAGAAGACCTTTTATAGAACGTCTTCCAACTTCATCAACAACTTTGGTCACACTTGAAACCACTGAGGTATTTGGGCTTGATGCAGAGGATGTTAAGTATGTGACACAACATTTTAGGTACACATTTGTAAAGGAAAATGTTAGGAGAAGTGTTAGATATTACTCACCTGGTTGGAGAACTTGGGCTGCTGTGGCAATTCAATTGGCTTGGAGAAGGTCCAAACATAGGTTGACTTTGACTTCTTTGTCTTTTATTATGCCTCGTAGGCCATTATCAAGGTCAACTTCCTTGGAAGAGGATAGGCTTCGCCTTTATACAGCTCTATTAACCTCACCAAAGCCTAATCAGGATGATTTTGACTCTTCATAA 2067 0.3919 MAPDQRAINSHMQQHYYYNNTDNDNDSDDDNEVVSDIDDDLTYEERKGEIKTKDDNNNNNNDVFGGSRLKERCSFSLGRVLFDPRGKWVEEWNRVFLLVCAMGLFVDPLFFYALSISDTCMCLFVDGWLLVTVTVIRCMTDALHLWNIWLQFYIHRRSSFGFIHHHRHHTSHALHYFKHNKAFLFDIFVLLPLPQIVLWVTIPSLLEKGSIPLLMTILLIMFLFQYLPKIYHSVCFVRRNLSGYTFGTVWWGFALNMIAYFVASHAAGACWYLLGLQRAAKCLEEQCVNTSGCGMRTLCCKEPIYYGSNSMVKKLERTRLVWAQNREARSTCLTSADNYDYGVYEWSVQLVTNDSRLEKILLPIFWGLMTLSTFGNLQSTTERMEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQVMRLKMTNIEWWMRKRQLPQGLRQRVRNYERQRWAAMRGVDECQLIKNLPEGLRRDIKYHLCLGLVRQVPLFQHMDELVLENICDRVKSLVFTKGETLTREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPTSSTTLVTLETTEVFGLDAEDVKYVTQHFRYTFVKENVRRSVRYYSPGWRTWAAVAIQLAWRRSKHRLTLTSLSFIMPRRPLSRSTSLEEDRLRLYTALLTSPKPNQDDFDSS 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02098 688 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 15 684 - -
Car01g02098 688 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 15 684 - -
Car01g02098 688 ProSiteProfiles cAMP/cGMP binding motif profile. 490 600 IPR000595 -
Car01g02098 688 SUPERFAMILY Voltage-gated potassium channels 83 411 - -
Car01g02098 688 Pfam Cyclic nucleotide-binding domain 510 598 IPR000595 -
Car01g02098 688 Gene3D Helix hairpin bin 415 481 - -
Car01g02098 688 Gene3D Jelly Rolls 488 606 IPR014710 -
Car01g02098 688 SUPERFAMILY cAMP-binding domain-like 416 604 IPR018490 -
Car01g02098 688 SMART cnmp_10 490 619 IPR000595 -
Car01g02098 688 CDD CAP_ED 490 570 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02098 Car-Chr1 46439031 46453122 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02098 77 686 Ion Channels AT5G54250 76.973 0.0 971
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02098 K05391 - gmx:100800795 1041.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02098 01 46439031 46453122 Car01g02098 01 46439031 46453122 ECH