Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02090 ATGAACGGCAAAGCCAACGTTACCAAGGAGCTTAACGCCAAGCACAAAAAGATACTTGAAGGACTTCTTAAACTACCAGAGAATCGGGAATGTGCTGACTGCAAAACTAAAGCTCCAAGATGGGCTAGTGTAAATCTTGGCATCTTTATATGCATGCAGTGTTCAGGAATACATCGAAGTTTGGGGGTACATATATCAAAGGTTCGTTCTGCAACTCTTGACACTTGGCTTCCAGAGCAAGTTGCATTCATTCAATCAATGGGAAACGAGAAAGCAAATAGTTACTGGGAAGCAGAATTACCTCCAAATTATGATAGAGTTGGAATTGAACATTTCATTCGTGCAAAGTATGAAGATAAGAAATGGGTTTCAAGGGATGGTAATCCAAAAACACCTTCTGGACCGCGTGAAGATAAATCTCCTTCACATTGGCCAAGGCCTGTGGAAAAAAGCGGACTTGGATATGCCACTGTTCATGAGAATATGTTCCAGGAAAGGAAGAAAGTCCAACCATCAAATCCAGTTCGTGCTACAAGACACAGTGTTCCTGCTCCTCCCAAAGCACCAGAGCAGGTAACTCCCGCTACCCAACCTCAGCACACTGAGAAAGTGGAATCAGTAGCCCCACAACAACAAGCTGGAACTTCAAAGCAGGCTACAGACACAGCTCAAAATACCCCTCCCAAAGTAGACTATGCTACAGACCTTTTCAACCTGTTGTCTATGGATGCCTCAAATGAAAATGGCTCCAAAGCAGCTGGTGCTACTGCTGATGATAGTAGCTGGGCAGGCTTTCAGTCTGCTGTGGAGGTGTCAACAGCCGAGAAGGCTGGTCCACCAAACGCAGTTGAGAGTACTCCTCAATCTGCACCTGGAATTGAGGATCTATTTAAAGATTCACTTTCTGTGACACCAAGTTTAgcttcagcaaaaccacagaaagatgtgaaaaatgatataatgagcctctttgagaagAGCAATATGGTATCTCCATTTGCAATGCATCAACAACAGCTTGCAATGCTAGCTCAGCAGCAGTCTCTTCTGATGGCTGCAGCAGCTAAATCTACTGGTGTTGATCTCAAGTATCCTGTTGGCATACAACAACCGAGTCCCAATGTTTCTGTACAAAATTGGCCAGCTACTGGATTCCCAACATCTGGAGTAATGCCCATGGGTACTCAGGTAGAGCTGCAGAAACTTATGCAGCCTAGGAACATGACTCCGGCACATCCGGCAGGGAACGCTGTTCAATATCCACCATCTGGTTTCTATGCTATGGGGCAAGTTGGTCCAGTCAATGGTATGATGACGATGGGAGCAAGTAAACCTCAGTCAACTCCAGTGTCGTCAACCACTTCTAAGTCTGCGAAGGAATATGATTTTTCCTCATTAACACAAGGGATGTTTGCGAAACAATGA 1425 0.4323 MNGKANVTKELNAKHKKILEGLLKLPENRECADCKTKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIEHFIRAKYEDKKWVSRDGNPKTPSGPREDKSPSHWPRPVEKSGLGYATVHENMFQERKKVQPSNPVRATRHSVPAPPKAPEQVTPATQPQHTEKVESVAPQQQAGTSKQATDTAQNTPPKVDYATDLFNLLSMDASNENGSKAAGATADDSSWAGFQSAVEVSTAEKAGPPNAVESTPQSAPGIEDLFKDSLSVTPSLASAKPQKDVKNDIMSLFEKSNMVSPFAMHQQQLAMLAQQQSLLMAAAAKSTGVDLKYPVGIQQPSPNVSVQNWPATGFPTSGVMPMGTQVELQKLMQPRNMTPAHPAGNAVQYPPSGFYAMGQVGPVNGMMTMGASKPQSTPVSSTTSKSAKEYDFSSLTQGMFAKQ 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02090 474 PANTHER ARF GTPASE ACTIVATOR 1 474 - -
Car01g02090 474 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Car01g02090 474 CDD ArfGap 19 117 - -
Car01g02090 474 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Car01g02090 474 MobiDBLite consensus disorder prediction 193 230 - -
Car01g02090 474 Gene3D Arf GTPase activating protein 2 129 IPR038508 -
Car01g02090 474 MobiDBLite consensus disorder prediction 123 145 - -
Car01g02090 474 MobiDBLite consensus disorder prediction 123 150 - -
Car01g02090 474 MobiDBLite consensus disorder prediction 165 230 - -
Car01g02090 474 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Car01g02090 474 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Car01g02090 474 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Car01g02090 474 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Car01g02090 474 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 474 IPR044520 GO:0005096
Car01g02090 474 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02090 Car-Chr1 46339608 46345467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02090 16 123 C2H2 Transcription Factor Family AT4G05330 49.138 5.67e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02090 K12486 - gmx:100789910 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02090 01 46339608 46345467 Car01g02090 01 46339608 46345467 ECH