Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02078 ATGGGAATTCAAGATAAAGACCCTCTTTCACAATTGAGTTTGCCTCCTGGTTTTCGTTTTTACCCCACCGATGAAGAGCTTCTTGTTCAATATCTTTGTCGCAAAGTAGCTGGTCATCATTTCTCTCTTCAAATCATTGCTGAAATTGATCTCTACAAATTTGACCCATGGGTTCTTCCAAGTAAGGCGATATTTGGTGAGAAAGAATGGTACTTTTTCAGTCCAAGAGATAGGAAGTATCCAAATGGGACTAGACCCAATAGAGTAGCTGGATCTGGGTATTGGAAAGCTACTGGAACAGACAAGATAATCACAAATGAAGGTAGAAAAGTTGGAATTAAAAAAGCACTTGTTTTCTATGTTGGTAAAGCTCCTAAAGGCACCAAAACCAATTGGATTATGCACGAATATCGTTTACTTGATTCTTCTCGAAACAACACCGGCACCAAGTTAGATGATTGGGTTCTATGTCGTATATACAAGAAGAACTCTAGTGCACAAAAAGCCATTCCAAACGGCATCGTTTCAAGTAGAGAATACACTCAATACAGCAACGATTCATCCGCGTCTTCATCCTCCCACCTCGACGACGTTCTACAATCACTTCCAGAAATCGACGACCGTTGCTTCATGCTGCCACGTGTCAACTCATTAAGAACAATGCAACATCGTCAAGAAGAAGACAAGCTTAATCTTCTTAATCTCAATAATAATAATTTAATGGATTGGTCTAATCCGTCGTCAATTCTCAATACAGAGTTTCAAGAAGGACAAAATAATGGAATGGTTAATTATAGTAGTTGTAACGATCTCTATGTCCCTTCTGTGTCCACGATATGTCACGTGAACACATCGGGGACAGAGAAGAAACCAATGGAGGAAGAGGTTCAGAGTGGTGGAGCAAGAACAAACCCCGGATTATTTGAACGTGGTTCGAATAATTTTACTTATTCTAATTCGGTTGATTCgtttgggtttaggtatccggttcaaccggttgggtttgggtttgggCAATGA 1020 0.3775 MGIQDKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLQIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGTRPNRVAGSGYWKATGTDKIITNEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRNNTGTKLDDWVLCRIYKKNSSAQKAIPNGIVSSREYTQYSNDSSASSSSHLDDVLQSLPEIDDRCFMLPRVNSLRTMQHRQEEDKLNLLNLNNNNLMDWSNPSSILNTEFQEGQNNGMVNYSSCNDLYVPSVSTICHVNTSGTEKKPMEEEVQSGGARTNPGLFERGSNNFTYSNSVDSFGFRYPVQPVGFGFGQ 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02078 339 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Car01g02078 339 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Car01g02078 339 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Car01g02078 339 PANTHER NAC TRANSCRIPTION FACTOR 56 1 302 - -
Car01g02078 339 SUPERFAMILY NAC domain 10 163 IPR036093 GO:0003677|GO:0006355
Car01g02078 339 MobiDBLite consensus disorder prediction 286 310 - -
Car01g02078 339 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 1 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02078 Car-Chr1 46189792 46192025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02078 1 326 NAC Transcription Factor Family AT1G52890 58.434 7.49e-125 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car01g02078 NAM 6.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02078 - - mtr:MTR_2g079990 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02078 01 46189792 46192025 Car01g02078 01 46189792 46192025 ECH