Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02055 ATGGCAGAGGTCACAGAATCCTCAAACAAACAATTTGATGGTTTGATGCACATGTATGTGTATGTCATAACATTTGATCTTCCAACATTTGCAATTGTTTGTATCATAATCACAATGTTACTCTTCATATTCCATCAAATTTTCCAAGGTTTATTCTATTGGCTCATAGAAATGAGACCTATCAACATTGACCATGACATTGAACAAGGAACTCGTGATCTAGCTTATAATAACGACGACGGACATGTTTCTCGTCGACGAGTTACCGTCTTTCATGCTGTAGTTTTCAGCAATTTTCAGGCATGGACAATGGTGGCTTCAATTGATGAAAAAAGAGGACAAAAACTTAGAGCTTCTAAGAAATTGCCACCTTTGATGAGCTATGGAGTTGGAAGAAATGATGATGAGTTAAGAAGAAGTTGCAATGAATGTGCCATTTGTTTGGAAGATTTTCAAGAGAGGCAATTGTGTCAAGTTTTTCCTGTTTGCAAGCACATTTTTCATTCAGATTGTAGTGATCATTGGTTGCAGAAGAAATCAACTTGCCCAATATGTCGTAATTGTATAGATTAA 573 0.3613 MAEVTESSNKQFDGLMHMYVYVITFDLPTFAIVCIIITMLLFIFHQIFQGLFYWLIEMRPINIDHDIEQGTRDLAYNNDDGHVSRRRVTVFHAVVFSNFQAWTMVASIDEKRGQKLRASKKLPPLMSYGVGRNDDELRRSCNECAICLEDFQERQLCQVFPVCKHIFHSDCSDHWLQKKSTCPICRNCID 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02055 190 Pfam Ring finger domain 142 186 IPR001841 -
Car01g02055 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 190 IPR013083 -
Car01g02055 190 PANTHER RING FINGER DOMAIN-CONTAINING 17 189 - -
Car01g02055 190 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 17 189 - -
Car01g02055 190 SUPERFAMILY RING/U-box 143 189 - -
Car01g02055 190 SMART ring_2 144 185 IPR001841 -
Car01g02055 190 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02055 Car-Chr1 45910696 45911268 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02055 24 187 C3H Transcription Factor Family AT1G53010 29.825 7.16e-19 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02055 - - mtr:MTR_2g079320 286.189