Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02047 ATGGGTTGCATGTGTTGCAAGCCATCTGCAATTGAGGACAGTAAGGAGAGTCCAAGGGAGCGTTTATCGAACAAGGCGGTGCTGGAATCTCGTGTGTCTAGAGGAGCTTCGTCGAGGAGGGAGGAATTAGCGTATAGGGTGAAGGATAGATGTGATAACAACAATGATGCGAGGACGGCGTTGATTGATAAGCAAGGGCAAGGGAATGGCTCTGTTAGAGTGCATGGTGATAATTTTGAGAGGAAGAGGGAGAAAATGGAGTATGTTGTTGCTCAACATCCGGGGCTTGGTAGTGTTCCTAAGGCTATGGAAGGGGAGCATGTTGCCGCTGGTTGGCCGTCATGGTTGGCAGCAGTTGCTGGAGAAGCAATCAAGGGATGGCTGCCACGACGTGCAGATTCTTTTGAGAAATTGGATAAAATTGGCCAGGGAACTTACAGTAATGTTTATAGAGCTCGTGATCTTGAACAACGAAAGATCGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTGAGCCTGAGAGTGTTCGTTTCATGGCAAGGGAAATTCACATTCTACGTAGGCTTGATCATCCAAATGTCATAAAACTTGAAGGCTTGGTTACATCAAGGATGTCGTGCAGCTTATACCTTGTTTTTGAGTACATGGAGCATGACTTGGCCGGGCTTGCATCGCATCCTGGACTGAAGTTTACTGAAGCACAGGTTAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCACTGCCACAGCCGTGGTGTACTGCATCGTGACATTAAGGGTTCCAATCTTTTGATTGACAACAATGGAGTATTGAAAATTGCAGACTTTGGTTTGGCAAGCTTTTTTGATCCCAATCAAACTCAGCCACTGACAAGCCGAGTTGTCACTCTCTGGTATAGGCCCCCCGAGCTTTTACTTGGAGCTACTTACTATGGCACTGCTGTAGATTTATGGAGTACAGGTTGCATACTTGCCGAGCTGTATGCTGGCAAGCCTATAATGCCTGGTAGAACTGAGGTGGAGCAGTTGCATAAAATTTTTAAACTTTGTGGTTCGCCTTCCGAGGACTATTGGAGAAAATCAAAATTGCCTCATGCAACAATATTTAAGCCTCAACAACCCTATAGGCGTTGTGTTGGTGAAACATTCAAGGACTTTCCTGCACCTGCAATAGAACTGATAGAGACACTTTTGTCCATAGACCCCGCTGATCGTGGAACTTCAGCATCTGCTTTGATAAGTGAGTTCTTCTCAATAAAGCCTCTACCATGTGATCCTTCAAGCTTGCCAAAGTATCCTCCTAGCAAAGAATTTGACGCCAAAGTACGGGACGAAGAAGCTAGAAGACAAGGGGCAGCAGGAAGCAAGGGTCAGAGACATGACCCCGAGAGAAGAGGAGTCCGAGAATCTCGAGCTATTCCTGCACCTGATGCCAATGCTGAACTGGTCTTGTCAATGCAGAAGAGACAAGGTCAGAACTTTTCTCAAAGCAGGAGCGAGAAGTTTAACCCTCATCCTGAAGAAGCTGCTTCTGGTTTTCCCATTGAACCCCCTAGACCATCACAAGCTGCAGAAGTAAGCGTTGATCCTCAGGCAAATCAACATAAAAGAGCCTCCCATTCAGGTCCACTGACTCACCGTGCTGCATGGGCAAAAGCTGGGAAGAACCACGATGACGCTCCAAAGATTTCAATGGGTGGTGGTGACTTATCTACAATCTCGGGCTTAGTTGCCGCCAGGAGGAGTATGCTGTCTGATGATCGAAGAGAATGTTCTGGGTCGTCACAAGTCGAGGCTCCAAAACTAATTACCAGGTTTCCAGGTTCCTTCAAGGAGGCCTCTGAATCATTGACGCAACAAAATCAGAAGCATCATGTTCATGCTTCTCAAAAGGAAGAAGGGAAAGGCAGCAACAAAGACCCTAATCTTGTTGGTTATGGATCAAAGGGCTATAAAATTCATTATTCTGGTCCATTGCTTGTTCCATCAAGCAACATGGATCAAATGTTGAAAGACCATGACCGCCAAATTCAGGAGGCGGTCAGAAGAGCACGTCTCGACAAGGCAAAAATGCGAAGACTCCAAGCTGAGGGGAACCAGATAAGCAATTCATTATTTGTTTCTGGCCGCTGA 2139 0.46 MGCMCCKPSAIEDSKESPRERLSNKAVLESRVSRGASSRREELAYRVKDRCDNNNDARTALIDKQGQGNGSVRVHGDNFERKREKMEYVVAQHPGLGSVPKAMEGEHVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQRKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLRGLDHCHSRGVLHRDIKGSNLLIDNNGVLKIADFGLASFFDPNQTQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVGETFKDFPAPAIELIETLLSIDPADRGTSASALISEFFSIKPLPCDPSSLPKYPPSKEFDAKVRDEEARRQGAAGSKGQRHDPERRGVRESRAIPAPDANAELVLSMQKRQGQNFSQSRSEKFNPHPEEAASGFPIEPPRPSQAAEVSVDPQANQHKRASHSGPLTHRAAWAKAGKNHDDAPKISMGGGDLSTISGLVAARRSMLSDDRRECSGSSQVEAPKLITRFPGSFKEASESLTQQNQKHHVHASQKEEGKGSNKDPNLVGYGSKGYKIHYSGPLLVPSSNMDQMLKDHDRQIQEAVRRARLDKAKMRRLQAEGNQISNSLFVSGR 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02047 712 PANTHER CYCLIN-DEPENDENT KINASE 1 694 - -
Car01g02047 712 Gene3D Transferase(Phosphotransferase) domain 1 218 458 - -
Car01g02047 712 MobiDBLite consensus disorder prediction 430 546 - -
Car01g02047 712 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02047 712 MobiDBLite consensus disorder prediction 617 647 - -
Car01g02047 712 MobiDBLite consensus disorder prediction 438 473 - -
Car01g02047 712 PANTHER CELL DIVISION PROTEIN KINASE 1 694 - -
Car01g02047 712 MobiDBLite consensus disorder prediction 487 502 - -
Car01g02047 712 Coils Coil 679 699 - -
Car01g02047 712 Gene3D Phosphorylase Kinase; domain 1 122 217 - -
Car01g02047 712 SUPERFAMILY Protein kinase-like (PK-like) 129 421 IPR011009 -
Car01g02047 712 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Car01g02047 712 CDD STKc_CDK9_like 135 419 - -
Car01g02047 712 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02047 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Car01g02047 712 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02047 Car-Chr1 45842149 45848970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02047 127 464 Core Cell Cycle Gene Families AT5G10270 52.542 4.96e-119 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Car01g02047 Pkinase 5.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02047 - - gmx:100792173 1291.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02047 01 45842149 45848970 Car01g02047 01 45842149 45848970 ECH