Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02046 ATGAAGATGGAGGGTTCTTCTGGTTCTGCTTTGCAGAATTCTGAGAGTTCTAGGGCATTGAATAGTTCTGGAGTCTCAGATAGGAATCAAAGGGTTCATTGTCCTGAAGGAAACCCTTTTTCGGGCGAAGGATCGCAAGGTTCACGTTTTAGAAAGGAAAGGGAATGGATTCTTAGTGGACAAGGTGATCAACCTAAAAATTTAGGTGGGTTTTGTGAGGATGAAGTAGAGAACGACCCTTTCTTTTGTTCTATAGAATGGGGTGATATTAGCTTGAGGCAATGGTTGGATAAACCTGATCGGTCCGTAGATTTCTTTGAGTGTTTGCATATATTTAGGCAAATAGTTGAAATCGTTAATGCGGCGCATTGTCAAGGAGTTGTAGTTCATAATGTGAGGCCTTCTTGCTTTGTCATGTCGTCTTTCAACCATATATCGTTTATTGAATCGGCTTCTTGCTCGGATACCAGTTCAGATTCTTTAGGAGATGGAATGAACAACGACCAAGGCATTGAGGTTAAAACACCGACATCTCACTGTCCTCATGATATAATGCATCATCAGAGTTTAGGAAGTGAAGATTTTGCACCTGCCAAGATTTCGGTGGCTGCTCGGTCTGATTCTAGTTGCATGCTGTCAAGTGCCGTCTATGCAGCTCGTGCATCATTAATAGAAGAAACGGAAGAAAATAAAATGAAAGATAGGAGGAAGGACGAAGAAGTGGAAGGGAAAAAGCAATCGTTTCCGATGAAACAGATATTGCTAATGGAGATGAGTTGGTATACCAGTCCTGAAGAAGTTTCCGGTACTCCTAGTTCATGTGCTTCGGATGTTTACAGATTGGGGGTCCTCCTTTTCGAGCTATTTTGTCCACTGAGCTCAAGAGAAGAGAAAAGTAGAACAATGTCTAGTCTTAGACATAGAGTTCTTCCTCCACAGTTACTTCTAAAGTGGTCTAAGGAAGCTTCATTTTGCTTATGGTTACTACATCCTGACCCTAGCAGTCGCCCAACACTAGGGGAGTTGTTGCAGAGTGAGTTCCTTAACGAACAGCGAGATGATATGGAAGAACGTGAAGCAGCAATAGAGCTAAGGCAAAAGATAGAAGATCAAGAGTTGTTACTAGAATTCCTTTCGTTACTCAAACAAAGAAAACAAGAAGTTGCTGAAAAGTTGCAACATACTATCTCCTTTTTGTGTTCTGATATCGAAGAAGTGACCAAGAAGCAAACTAGGTTTAAAGAGATTTCCGGGGTTGAACTAGGGAGTGACGGTCGATCCCCATCGACTTTCCCGTCCATGACAGTTGTTGATACCAAGGATTCCGCTTGTTTAGGAACTAGAAAACGAGTTAGACTAGGGATGCATACCAATAACATTGATGAATGTGATGATAACATGGACAATGATCAGAAAAATCAGGGAAGTTTTCTTTCGAAAAGTTCACGGCTAATGAAAAACTTCAAGAAACTTGAGTCAGCATACTTTTTAACACGATGCAGACCAACCTATTCCTCAGGGAGACATGCAGTTAGACATTCATCTATAGCAAATGATGGGAGAGGGTCTGTTGTCATGAGCGAAAGAAATAGCATCAATAACTTGGCGTTGAAAGATCAAAGCAGGGACAGTGTGAGTGCTTGGATAAACCCTTTCCTCGAGGGTTTGTGCAAGTACTTATCTTTCAGTAAGCTTAAGGTTAAAGCCGACCTGAAGCAAGGTGATCTTTTGCATTCTTCCAACCTAGTATGCTCGCTCAGTTTCGACCGCGATGGAGAATTTTTTGCAACAGCTGGTGTGAATAAGAAAATCAAAATATTTGAATGTGATACAATCATAAATGAGGATCGTGATATCCACTATCCGGTAGTGGAGATGGCTAGCAGGTCAAAGTTGAGCAGTTTATGTTGGAATACATACATCAAAAGCCAAATTGCTTCAAGTAACTTTGAAGGTGTTGTACAGTTATGGGATGTTACAAGAAGTCAAATACTATCTGAAATGAGGGAGCACGATCGGCGAGTGTGGTCCATTGATTTCGCATCAGCAGATCCAACAATGCTGGCGAGCGGCAGCGACGACGGTTCCGTTAAGCTATGGAGTATCAATCAGGCAATTCCATTTTTGCACTTGGCGGAATATCAGCTTTGTGAAAACTAA 2160 0.4162 MKMEGSSGSALQNSESSRALNSSGVSDRNQRVHCPEGNPFSGEGSQGSRFRKEREWILSGQGDQPKNLGGFCEDEVENDPFFCSIEWGDISLRQWLDKPDRSVDFFECLHIFRQIVEIVNAAHCQGVVVHNVRPSCFVMSSFNHISFIESASCSDTSSDSLGDGMNNDQGIEVKTPTSHCPHDIMHHQSLGSEDFAPAKISVAARSDSSCMLSSAVYAARASLIEETEENKMKDRRKDEEVEGKKQSFPMKQILLMEMSWYTSPEEVSGTPSSCASDVYRLGVLLFELFCPLSSREEKSRTMSSLRHRVLPPQLLLKWSKEASFCLWLLHPDPSSRPTLGELLQSEFLNEQRDDMEEREAAIELRQKIEDQELLLEFLSLLKQRKQEVAEKLQHTISFLCSDIEEVTKKQTRFKEISGVELGSDGRSPSTFPSMTVVDTKDSACLGTRKRVRLGMHTNNIDECDDNMDNDQKNQGSFLSKSSRLMKNFKKLESAYFLTRCRPTYSSGRHAVRHSSIANDGRGSVVMSERNSINNLALKDQSRDSVSAWINPFLEGLCKYLSFSKLKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKIFECDTIINEDRDIHYPVVEMASRSKLSSLCWNTYIKSQIASSNFEGVVQLWDVTRSQILSEMREHDRRVWSIDFASADPTMLASGSDDGSVKLWSINQAIPFLHLAEYQLCEN 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02046 719 Gene3D - 554 715 IPR015943 GO:0005515
Car01g02046 719 Pfam WD domain, G-beta repeat 578 607 IPR001680 GO:0005515
Car01g02046 719 Pfam WD domain, G-beta repeat 664 701 IPR001680 GO:0005515
Car01g02046 719 SUPERFAMILY Protein kinase-like (PK-like) 70 347 IPR011009 -
Car01g02046 719 ProSiteProfiles Protein kinase domain profile. 1 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02046 719 SUPERFAMILY WD40 repeat-like 580 704 IPR036322 GO:0005515
Car01g02046 719 PANTHER PROTEIN SPA1-RELATED 2 3 705 IPR044630 GO:0009640
Car01g02046 719 Coils Coil 345 365 - -
Car01g02046 719 SMART WD40_4 661 701 IPR001680 GO:0005515
Car01g02046 719 SMART WD40_4 573 608 IPR001680 GO:0005515
Car01g02046 719 SMART WD40_4 619 658 IPR001680 GO:0005515
Car01g02046 719 PANTHER PROTEIN SPA1-RELATED 3 3 705 - -
Car01g02046 719 SMART serkin_6 4 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g02046 719 ProSiteProfiles Trp-Asp (WD) repeats profile. 668 703 IPR001680 GO:0005515
Car01g02046 719 MobiDBLite consensus disorder prediction 1 49 - -
Car01g02046 719 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 668 703 - -
Car01g02046 719 Gene3D Transferase(Phosphotransferase) domain 1 89 360 - -
Car01g02046 719 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02046 Car-Chr1 45821324 45826787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02046 578 702 Miscellaneous Gene Families AT5G08390 30.400 3.98e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Car01g02046 WD40 0.00021 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02046 - - gmx:100811457 1197.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02046 01 45821324 45826787 Car01g02046 01 45821324 45826787 ECH