Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02027 ATGGAGAGGAATCAAACATCACTTAAGAAAGACAACATAGTTgaacatgaagaagaggaagatgaggaggatgaaagtcatgaagaaaatgagaagaagaaaagTGCTTGTGTGAATGGGAAAAAAAGGCCAAGTAAAAGTGGAAGATTTTCTCCACCTTTCTGTCAAGCTGAAAGTTGTGATGCTGATTTTACTTTATCAAAAAGGTACCATCGTCGCCATAAGGTGTGTGAGGTTCATTCCAAGGCTCCTTCTGTGGTGGTTGCAGGGCTGAGGCAGAGGTTTTGTCAGCAATGTAGCAGGTTCCATGAGCTGATGGAGTTTGATGAAGCTAAAAGAAGCTGTCGAAGACGCTTAGCGCGACACAATGAACGTCGTCGTAAAAGCCCTTCTGGAATTTGCAATGAAGGAAGCAGTAGTGGCATCAAAGGGCAGCAAGACAGAGATGGTGATTGGAACAAAATTGAGATGGACATGTCAAGAAGTTCTAGTCACGAGTTTTTGAATTTCAGCTGA 516 0.3798 MERNQTSLKKDNIVEHEEEEDEEDESHEENEKKKSACVNGKKRPSKSGRFSPPFCQAESCDADFTLSKRYHRRHKVCEVHSKAPSVVVAGLRQRFCQQCSRFHELMEFDEAKRSCRRRLARHNERRRKSPSGICNEGSSSGIKGQQDRDGDWNKIEMDMSRSSSHEFLNFS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02027 171 Coils Coil 13 33 - -
Car01g02027 171 MobiDBLite consensus disorder prediction 119 171 - -
Car01g02027 171 ProSiteProfiles Zinc finger SBP-type profile. 52 129 IPR004333 GO:0003677
Car01g02027 171 MobiDBLite consensus disorder prediction 1 15 - -
Car01g02027 171 MobiDBLite consensus disorder prediction 132 146 - -
Car01g02027 171 Gene3D - 46 116 IPR036893 GO:0003677|GO:0005634
Car01g02027 171 SUPERFAMILY SBT domain 53 132 IPR036893 GO:0003677|GO:0005634
Car01g02027 171 MobiDBLite consensus disorder prediction 147 161 - -
Car01g02027 171 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 149 IPR044817 GO:0003677
Car01g02027 171 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 16 149 - -
Car01g02027 171 MobiDBLite consensus disorder prediction 1 49 - -
Car01g02027 171 Pfam SBP domain 55 128 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02027 Car-Chr1 45538889 45541388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02027 12 164 SBP-box Gene Family AT3G15270 46.753 1.65e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Car01g02027 SBP 4.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02027 - - mtr:MTR_2g078770 221.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g01598 06 15786854 15788817 Car01g02027 01 45538889 45541388 ECH
Car01g02027 01 45538889 45541388 Car01g00334 01 2602840 2605215 ECH
Car01g02027 01 45538889 45541388 Car06g01598 06 15786854 15788817 ECH
Car01g02027 01 45538889 45541388 Car01g02027 01 45538889 45541388 ECH