Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02021 ATGGATAACTTTTACCATcatcaccataaccatatcatcaacaataataataacaacaacaacaataacaGTGATGCACATTTGCCACCTGGATTTCGTTTCCATCCAACAGATGAAGAACTAATCACATTTTATCTTCTGAAAAAAGTTCTTGACAACACTTTCACTGCAAGAGCCATAGCTGAAGTTGATCTCAACAAATGTGAACCATGGGAGCTTCCTGAGAAAGCTAAGATGGGTGAAAAAGAATGGTATTTCTTCAGTTTACGTGATAGGAAGTATCCAACTGGTTTAAGAACTAATAGAGCAACAGAAGCTGGTTATTGGAAAGCAACAGGAAAAGACAGAGAGATTTATAGCTCTAAAACTTACTCTCTTGTTGGAATGAAGAAAACCCTTGTTTTCTATAGAGGTAGAGCTCCTAAAGGTGAAAAGAGTAACTGGGTTATGCATGAATATCGCCTTGAAGGAAAATTTGCTTACCATTTTCTCTCTAGAAACTCCAAGGATGAATGGGTGATTTCACGTGTGTTTCAAAAGAGTCACACCGGAACCGGAAGCTCCACCGTATCAGCCACCACAAGTGGTTCAAAAAAGACCAAAATAACCTCAACAACTTCAGCAAGCAACAATAGCATGAGTCTATGCCCTGAACCAAGTTCACCTTCTTCAGTTTACCTTCCACCTCTTCTTGATTCATCTCCTTACACTGCCGGCACCGCTGCAACCGCATTCGACAACCGTCAAATGTGTACTTacaacaacaacaacaacgacaacaacagctccaacaacacaacaaAGGAGCACGTGTCCTGTTTCTCCACAACATCAACAACATCAAATGTTGTCTCATGTCATAACAACTTCAACAACAATAATGGAAGTTTCGATCTTGTTTCTCCTTCTATGAATGCTATGGATCCATTTGCAAGGTTTCAAAGGAATGTTGGTGTTTCTGCTTTTCCAAGCTTGAGGTCATTGCAAGATAATCTTCAGCTTCCTTTCTTTTTCTCCACGGCGGCGCAGCCTTATCACGGTGGTGATAATATTCTCAGTGGATGGGGGTTGCCGGAGGAGCAAAAGGTGGTTGATACTGGTGGTGTCGTTAACATGGGAGGGTTAGGTTCCTCTGAGCTTGATTGCATGTGGaactattaa 1161 0.3807 MDNFYHHHHNHIINNNNNNNNNNSDAHLPPGFRFHPTDEELITFYLLKKVLDNTFTARAIAEVDLNKCEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTYSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHFLSRNSKDEWVISRVFQKSHTGTGSSTVSATTSGSKKTKITSTTSASNNSMSLCPEPSSPSSVYLPPLLDSSPYTAGTAATAFDNRQMCTYNNNNNDNNSSNNTTKEHVSCFSTTSTTSNVVSCHNNFNNNNGSFDLVSPSMNAMDPFARFQRNVGVSAFPSLRSLQDNLQLPFFFSTAAQPYHGGDNILSGWGLPEEQKVVDTGGVVNMGGLGSSELDCMWNY 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02021 386 MobiDBLite consensus disorder prediction 182 216 - -
Car01g02021 386 MobiDBLite consensus disorder prediction 1 30 - -
Car01g02021 386 MobiDBLite consensus disorder prediction 10 27 - -
Car01g02021 386 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 383 - -
Car01g02021 386 Gene3D NAC domain 37 184 IPR036093 GO:0003677|GO:0006355
Car01g02021 386 Pfam No apical meristem (NAM) protein 29 155 IPR003441 GO:0003677|GO:0006355
Car01g02021 386 ProSiteProfiles NAC domain profile. 28 180 IPR003441 GO:0003677|GO:0006355
Car01g02021 386 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 19 383 - -
Car01g02021 386 SUPERFAMILY NAC domain 25 180 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02021 Car-Chr1 45460198 45462284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02021 1 386 NAC Transcription Factor Family AT5G53950 50.481 7.11e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car01g02021 NAM 1.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02021 - - cam:101501114 657.136