Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02019 ATGGCTCCAAGAGACAGACCCACCGCACTACCCGGGCCCAGCCCATCAGCCCACAAAGAGATTCGTTTTAGAGGCGTTAGGAAACGTCCGTGGGGTCGTTACGCCGCTGAGATCCGTGACCCCGGCAAAAAAACACGAGTTTGGCTTGGTACTTTTGATACGGCCGAGGAAGCGGCGCGTGCTTACGACGCGGCTGCACGGGAGTTTCGTGGCTCGAAAGCTAAGACAAATTTTCCAACACCGTCGGAGATGCTTAATCTTAACATTAGTAACAACAGCACACGCAGCCCAAGTCAGAGTAGCACCCTTGAATCACCGTCACCGCCGCCGCTTGATCTAACTCTGACACCATTTTCCGCCACCGGCGTCGGTGCTGTTTCTTTGGCTTTTCCGGTATCCCGTCCTGTTTTATTTTTCGACGCGTTTGCACGCGCTGATACTGCGCTTAGCGTTGGTCGGCGTGAGATGTGCGCCGTGGCTGATTTTCGACGCGCCGTTTCTCACAGTGACTCGGATTCATCTTCCGTCGTGGATTATGAGCGTGTGCCACGTCAGAGAATCTTGGATCTTGACCTTAACGTTCCTCCACCACCTGAAGTTGCTTGA 606 0.5413 MAPRDRPTALPGPSPSAHKEIRFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGSKAKTNFPTPSEMLNLNISNNSTRSPSQSSTLESPSPPPLDLTLTPFSATGVGAVSLAFPVSRPVLFFDAFARADTALSVGRREMCAVADFRRAVSHSDSDSSSVVDYERVPRQRILDLDLNVPPPPEVA 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02019 201 MobiDBLite consensus disorder prediction 1 24 - -
Car01g02019 201 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Car01g02019 201 SUPERFAMILY DNA-binding domain 23 80 IPR016177 GO:0003677
Car01g02019 201 MobiDBLite consensus disorder prediction 75 109 - -
Car01g02019 201 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Car01g02019 201 PANTHER ERF FAMILY PROTEIN 1 185 - -
Car01g02019 201 MobiDBLite consensus disorder prediction 71 112 - -
Car01g02019 201 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Car01g02019 201 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 185 - -
Car01g02019 201 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Car01g02019 201 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Car01g02019 201 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Car01g02019 201 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02019 Car-Chr1 45437644 45438249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02019 19 168 AP2-EREBP Transcription Factor Family AT3G15210 54.878 4.30e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car01g02019 AP2 1.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02019 K09286 - gmx:100813652 224.557