Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02010 ATGGATCAAATGACGGATTCAGATATGGATCAACAGCGGCAAGGCTATTTTCATTCTGAACCTTGTGTTGTTTTGAGAGGCCCCAGCGTCGGACATCCTAACATCCGCTCGGTGGTGACTTCAGGGAACACTGCTATTGTTGATTCTCATTATCTACCAGACGCTTATGACAATGCTAGGGTCTACGGTGTTTCACAATACAATGGTATTCAGCCTCAACATAATCTTGATATGAGCGTTGCAACCGCAGGCAACATATATTATTCTGGGATGAATCCTTCTTCAAGTACCGGTGTTTTCCCTCTGCCTATAAATCACCGAGCTATTGATCAGTTGCCGGGTTCAAGCACATTTGCAATTTCCGGAGTTTCCTTAGATAACTTCGGAAGAAGCGCTGGTTTCATGGACGATGGTAGAGGTCCGTACAAAAGGAAAGTTGCTGACGGGATTAGAGGAAGTCACCAACAACATTTTAACGCTTCGGCTAGTTCATCTATTGCTCCTCCTAATGCTAGACACGCTGATGGGGTTACTATGATGGATACTGCGCCATTGCCATTCCATGTTCCTCCGCTCATTGGAGTAGGACCACATGGCAACGCATGGGGAAGATCAGGTGAGTCTATTATGGTGCATGACCATAACCATTTGATTCATGGAAACTATTTGGGGCAACACTTTCCGCCAGCTGCACCTCCTTGGTTGGAACAACAAGTGAATAGTAATAGCAATGATGGCCACACTACAGCCTGGAATCAGCCTATTCCAATGCCTTATGTACAGGCACCGAACATGAATGGCAGTTCATTAGAGAGTGCAAGTATGGGTTTGCAGAGGTATCACGACACAGCTGGTAACCGAAATGTCCTCAGGTTtcctcctcctcctccacctcTCAACCAACAGCACCATACTTATCATCATCCAACACTTCCAATGCAAGGAGTAAGAGGTCACAATATGACCTTTCACCCTCCGGTAGCTGCAGCTTCATTTCGAGCAGGTCCTAGGCATATTATCCCAGCACCATCAACAGGCTTCCGGATTTACCGACCTCATAGGCTCATGCCGGAGACAGCTCTCGGACATCGAAGTCTTCCTCCCATGGGCTTCCTCCAAGTTGATGATGTTGCTTTAATTGATGAAGTCGGAAATCTGATTGATCACCACCGAGATATGCGCTTAGACATAGAGGACATGTCTTATGAGGATCTTCTTGCGTTGGGCGAGAGGATTGGCAGTGTAAGCACTGGTTTATCCGAGGAAACAATTGCGACTCTACTAAAGACGAAAGTTTATTCACCGAAAGCCGCCACTATTAATCTCGAAGAGGCAGCTTCTGACGATCAGGAAACTGATTCCTGCATAATATGTCAAGAGGAATTTAAGAATAAAGAGAAGATTGGAATTCTTCGATGTGGGCATGAATATCATCTCGATTGCATAACAAAATGGCTTGTTGTAAAAAATGTATGTCCTCTATGCAAGTCAGAAGCTTTGCCTCTTCCAAAGAAGGAATAG 1521 0.4451 MDQMTDSDMDQQRQGYFHSEPCVVLRGPSVGHPNIRSVVTSGNTAIVDSHYLPDAYDNARVYGVSQYNGIQPQHNLDMSVATAGNIYYSGMNPSSSTGVFPLPINHRAIDQLPGSSTFAISGVSLDNFGRSAGFMDDGRGPYKRKVADGIRGSHQQHFNASASSSIAPPNARHADGVTMMDTAPLPFHVPPLIGVGPHGNAWGRSGESIMVHDHNHLIHGNYLGQHFPPAAPPWLEQQVNSNSNDGHTTAWNQPIPMPYVQAPNMNGSSLESASMGLQRYHDTAGNRNVLRFPPPPPPLNQQHHTYHHPTLPMQGVRGHNMTFHPPVAAASFRAGPRHIIPAPSTGFRIYRPHRLMPETALGHRSLPPMGFLQVDDVALIDEVGNLIDHHRDMRLDIEDMSYEDLLALGERIGSVSTGLSEETIATLLKTKVYSPKAATINLEEAASDDQETDSCIICQEEFKNKEKIGILRCGHEYHLDCITKWLVVKNVCPLCKSEALPLPKKE 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02010 506 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 416 500 IPR013083 -
Car01g02010 506 SUPERFAMILY RING/U-box 449 500 - -
Car01g02010 506 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 127 502 - -
Car01g02010 506 Pfam RING-H2 zinc finger domain 451 496 IPR024766 GO:0008270
Car01g02010 506 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 127 502 IPR045191 GO:0061630
Car01g02010 506 SMART ring_2 455 495 IPR001841 -
Car01g02010 506 ProSiteProfiles Zinc finger RING-type profile. 455 496 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02010 Car-Chr1 45302907 45332424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02010 372 503 C3H Transcription Factor Family AT2G15530 47.101 3.52e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02010 K19041 - gmx:100800642 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02010 01 45302907 45332424 Car01g02010 01 45302907 45332424 ECH