Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g02008 ATGGCACAGTTACCTCCTAAAATACCAACCATACCCCAAAATTGGCCATATTTTCCACACCAAAGGGTATCATCAACCACAATGTCAAAcatcacctccacaaccaccaccacaacaaccaATACTCATCATGATGATAATCAATCATCATGGATTGACGAATTCCTCGATTTCTCCTCGGCAAGGCGAGGGAGTCACAGACGCTCTGCCAGTGACTCTATTGCCTTCCTCGAGACATCATTTCTCGAGGAAGATTGCAGGAgtggtggagctggtggtggtggtggtggaggttttgatggACTAGACGACGACCAACTAATTTCCATGTTTTCTGACAATGTTCCTGGTGTCGTCTCGTTTATGCCTCCACCGATGTCATCAACCTCTAACCCATCTTCGCCGTCGTCCGACCAAAATAGCAATAACAATGAAGAGAAACCAATGGCAATGGTGTTGGATTCTTCACCAAGTCAAGAACATTATCATCATGAGGTGAAGCCTAAGGATGAAGCCGTTGAAGATGAAAGCTCGTGTAAGATTGAAGCAGAGGCAGCGCAGCCATCCTCCGCCGCAACCATCACCTGCACTGAAACCGTTGTTGATCCCAAGAGGGTCAAAAGAATTTTGGCTAACCGGCAATCAGCTCAGAGGTCAAGGGTGAGAAAGCTACAATATATTTCTGAGCTTGAAAGGAGTGTAACATCTTTGCAGACGGAGGTTTCAGCATTGTCACCAAGAGTAGCATTCTTGGACCATCAACGTTTGATTCTTAATGTCGACAACAGTGCCTTGAAGCAACGGATTGCAGCATTGGCTCAGGACAAGCTTTTCAAAGACGCTCATCAAGAAGCACTAAAGAAGGAAATAGAAAGGCTAAGACAAATCTATCACCAACAAAGCATACACAAGATGGGTAATTCAAATAATAACAATGGTCCTTCTCTTCAATCTACACAAACATCACAACCACAACAACAAAACTCAAATTTCCATCAACACTTGGGATGCAAAGACAAGGAGCAACTCCTTAGTTAA 1038 0.4046 MAQLPPKIPTIPQNWPYFPHQRVSSTTMSNITSTTTTTTTNTHHDDNQSSWIDEFLDFSSARRGSHRRSASDSIAFLETSFLEEDCRSGGAGGGGGGGFDGLDDDQLISMFSDNVPGVVSFMPPPMSSTSNPSSPSSDQNSNNNEEKPMAMVLDSSPSQEHYHHEVKPKDEAVEDESSCKIEAEAAQPSSAATITCTETVVDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKLFKDAHQEALKKEIERLRQIYHQQSIHKMGNSNNNNGPSLQSTQTSQPQQQNSNFHQHLGCKDKEQLLS 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g02008 345 SMART brlzneu 200 264 IPR004827 GO:0003700|GO:0006355
Car01g02008 345 Pfam bZIP transcription factor 204 249 IPR004827 GO:0003700|GO:0006355
Car01g02008 345 MobiDBLite consensus disorder prediction 123 149 - -
Car01g02008 345 MobiDBLite consensus disorder prediction 158 181 - -
Car01g02008 345 MobiDBLite consensus disorder prediction 304 345 - -
Car01g02008 345 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 202 254 IPR004827 GO:0003700|GO:0006355
Car01g02008 345 MobiDBLite consensus disorder prediction 120 184 - -
Car01g02008 345 CDD bZIP_plant_RF2 205 255 IPR044759 GO:0003700|GO:0006355
Car01g02008 345 MobiDBLite consensus disorder prediction 304 333 - -
Car01g02008 345 PANTHER BASIC LEUCINE ZIPPER 2 1 326 - -
Car01g02008 345 SUPERFAMILY Leucine zipper domain 204 258 IPR046347 GO:0003700|GO:0006355
Car01g02008 345 PANTHER BASIC LEUCINE ZIPPER 34 1 326 - -
Car01g02008 345 Gene3D - 203 255 - -
Car01g02008 345 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 207 222 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g02008 Car-Chr1 45271344 45276040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g02008 1 282 bZIP Transcription Factor Family AT3G58120 51.125 1.08e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Car01g02008 bZIP_1 1.5e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g02008 - - gmx:100820197 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g02008 01 45271344 45276040 Car01g02008 01 45271344 45276040 ECH