Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01992 ATGGGATCATCATTCAAGCCCATCTCATGCACCAGAAAAACCCCATATAGATTAGAAACCAAAAACTTATCATACAAATTGTGCAACCAACTTGACAAACTTACAAGTCTTTGTTTTGGTTCGAATCCCACGAGTAGTTCAAAGTTCATTTTGAAGGACGTAAATTGTGAGGCAAGGCCAGGGGAGCTTACCACTATAGCTGGTCCTAGTGGAGCTGGAAAAACAACACTGCTTGAAATTCTCGCCGGGCGAATACCTTCGCGTAAAGTTTCGGGACAACTACTTGTTAATCACAAGCCAATGGATGTGAACAGATTCAGAAGAGAATCCGGGTACATCACACAAGAAGATACTTTGTTTCCATCGCTAACAGTTCGAGAGACACTAATGTATAGTGCTTTGTTGAGGCTTCCGGGAGGGCGAAAAGTGGCTGCAATGAGAGTTGCAGAGTTGATGAAGCAGTTAGGATTGGATCCTATTGCAGATTCAAGAATTGGCAATGGATCAGACCATGGTATATCAGGCGGTGAAAGGCGAAGAGTTTCCATTGGTGTTGACTTGGTTCATGACCCTGCAGTTATTTTGATTGATGAACCAACTTCAGGTTTAGATTCATCATCAGCTCTTAATGTAATCTCATTGCTTAGACTAATGGCATTTAATCAAGGTAAAACAATTGTTCTAACTATCCACCAACCCGGTTTTCGAATCTTAGAGCAACTTGATAGGCTCATTTTGCTATCTGATGGATTTGTCATGCATAATGGTTCATTGAATCTTCTTGAGGCAAGGCTCAATTTATCTGGCCATCAAATTCCTAATCATGTCAATGTCCTTGAATTTTCTATTGATGTCATGCAAAGCTTGATTACTCTCACTTCAGAATCTGGGAACAATCAATTTCTTTGCAATGACAAAGAGCACCAAGAACACAAGATGAGAATGCAGTGCTCTATGATTGTTAAAGAAAAAGAAATTTTGTACTCAAATTCTCCAATGGAAGAGATTTTAATCCTAGGACAAAGATTTTGCAGTAACATATTCAGAACTAAACAACTCTTTGTTACAAGGGTCATACAAGCCTTAGTAGCTGGATTGATACTAGGGACCATATTCTTGAATGTTGGAAGCAAACAAAGTAAATTAGCATTACAAACGCGAAGCGGCTTCTTTGCTTTCAGCCTTACCTTTTTGCTATCATCAACAACAGAAGGGCTGCCTATTTTCTTGGAAGAGAGAAGAACTTTTATGAATGAGACCTCAAGAGGAGCTTATAGAGTTTCTTCATATGTTTTAGCAAATACATTTGTTTTTCTTCCTTTCCTTCTAATGGTTGGTCTTCTCTATACTACCCCAGTTTATTGGCTGGTAGGATTAAGAAAAGACATTGATGGATTCCTTTACTTCTCCTTAGTGGTTTGGTTAGTCCTACTCATGTCGAATTCACTTGTGGCATGTTTCAGCGCCTTAGTGCCGAATTTCATCATGGGAAGCTCGGTGATCGCCGGCCTAATGGGGTCATTCTTTCTATTCTCAGGGTATTTCATATCAAAGGATAAAATACCTAGTTACTGGATTTTTATGCATTATATAAGTCTATTCAAGTATCCATTTGAGTGCCTTATGATAAATGAGTATGGAGGTGAACAAGGGAAAAAGAGATGCATAGAAGTTAACAATGAGGAATGCACACTTTATGGAGTTGAGTTCTTAAGACAACAGGGTATGAAAGAGTCACACAAATGGACAAATTTGGCTTTAATGTTAAGCTTCATAATAGGGTATAGAGTGCTTAACTTTATAATTCTTTGGTCTAGATGTTACAAAAGCAGAAAATAA 1839 0.3844 MGSSFKPISCTRKTPYRLETKNLSYKLCNQLDKLTSLCFGSNPTSSSKFILKDVNCEARPGELTTIAGPSGAGKTTLLEILAGRIPSRKVSGQLLVNHKPMDVNRFRRESGYITQEDTLFPSLTVRETLMYSALLRLPGGRKVAAMRVAELMKQLGLDPIADSRIGNGSDHGISGGERRRVSIGVDLVHDPAVILIDEPTSGLDSSSALNVISLLRLMAFNQGKTIVLTIHQPGFRILEQLDRLILLSDGFVMHNGSLNLLEARLNLSGHQIPNHVNVLEFSIDVMQSLITLTSESGNNQFLCNDKEHQEHKMRMQCSMIVKEKEILYSNSPMEEILILGQRFCSNIFRTKQLFVTRVIQALVAGLILGTIFLNVGSKQSKLALQTRSGFFAFSLTFLLSSTTEGLPIFLEERRTFMNETSRGAYRVSSYVLANTFVFLPFLLMVGLLYTTPVYWLVGLRKDIDGFLYFSLVVWLVLLMSNSLVACFSALVPNFIMGSSVIAGLMGSFFLFSGYFISKDKIPSYWIFMHYISLFKYPFECLMINEYGGEQGKKRCIEVNNEECTLYGVEFLRQQGMKESHKWTNLALMLSFIIGYRVLNFIILWSRCYKSRK 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01992 612 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 6 604 - -
Car01g01992 612 Pfam ABC transporter 51 201 IPR003439 GO:0005524
Car01g01992 612 Gene3D - 33 273 IPR027417 -
Car01g01992 612 ProSitePatterns ABC transporters family signature. 173 187 IPR017871 GO:0005524
Car01g01992 612 PANTHER ABC TRANSPORTER G FAMILY MEMBER 10 6 604 - -
Car01g01992 612 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 264 IPR027417 -
Car01g01992 612 CDD ABCG_EPDR 41 256 - -
Car01g01992 612 SMART AAA_5 60 251 IPR003593 -
Car01g01992 612 Pfam ABC-2 type transporter 335 546 IPR013525 GO:0016020|GO:0140359
Car01g01992 612 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 18 274 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01992 Car-Chr1 45062978 45064816 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01992 30 261 Calmodulin-binding Proteins AT2G36910 27.049 5.06e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01992 K05681 - gmx:100776372 1029.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01992 01 45062978 45064816 Car01g01992 01 45062978 45064816 ECH