Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01988 ATGGAACATTTATGTGATGATAACTTCGAAGGATCTAGTGAAGAAAGAAAGATTTTTACAGACGTCTTTTTTGGTAATAACACTTTTCAGTTTAGTCAGAAGCGTGTTGTTTCTGGGGTCATCGACCTTGAACATGAATCCAATAAAAACACATTGAAATCATTTGGCTCTAGTAATGAAAACTCATTCATATTGCGTCCCTCGTCTTCAAGATTTACACATCCCGAGGAGGACATTAGTGTAATTCAGCATTCCAAAGAGACTGCTGCTATGGGGTGTTTTCCAGAGAGTTTCACTTGTGAAGACCAGAATGATGTGGATGTAAATGTCAAACGCATGAAATTTTCTCTGCATGAACCTCCTTGTAGTAGATCTAACTCAGAAGATGTTTTGGTTTCATCTGCAATTCCAAAAGTAGTAGTTTCTAACTTGGATTGTGCTGCTACAGACTGTGATAGTGAACCAATTGCATTTCGTACAGTTGAATCATCTAAACACGGTGTAATATCTAGTTGCTATGTATTGAAACATAACATGGTGCAAAATAAGCAAGTTTCTAACGATGATGTAGATGTTACAAATTGTAAATCTAAAACAGAAGATGGGAACATTGCAAAAGAGGTGTCTGTAAGTAAGGTAGTTGCTTCTCCTGTTTCCCAGGAGAGCTCTGCAAACAGGCTGGTAGTTACAAGTCCATCAATCACTGTTGTGAAAAAGTCCAAGTCTCCTTTAAAAACCGAGGAAATGCCGGAAGGGTTTCAATCTTCTAATATGGATGTCTCAAATTCATTGTCAAAGATAGACAAAGAGGATACCCGTTCTTTACTGCACTTTCATGTTATGCAGTTGTTTACGATGTCAGGCATTTCTGTTGAGAAGCATCAACGACCCTGTAGGCGGTACATGGAGTCGCTCTACAGGACACCGAAGGGAAAGCCTATTCGGGAATTTACAAAAGCATGGAAATTATGCAGCCAACTTTTGTCTGTTGAAAAATACAATGTATCATATGGAGGTCGTAAGGAATGGACCAATACCAGTGAATTATGGTCTGATCTATCGAGTGCACTAAAAAATATTGAAAAGTCAAAAACCCAGTCAGAAACTGCACCTATGTTGGCTTATCAGTGGTGGATTTTGGATCCTTTTGTTGTAGTTATATATATTGATAGAAAGATTGGTGCTCTGAAAAGGGGAGAGGTAATAAAAGCAACTTCAAGTTTCGCTTCTAGCAAGTATAACATGGCACGTGCTCCAGTTGATTCAGCCTGCGAGGATAGTTTTGGTGCTCATTCTGATCAAAAGCACGACCAAGCCATTTTATGTGACTCTTCAACAGCCACCGAAACAACAAAAACCGCTTCTGTGATAAACTATGATGCCTGTAATCAGAAATCTGATGGAAACCAGGAAGATATGTATGTTGTAGAACATAAACCTAACATTATAGAAAATCGATGTAGCACTATTACCCATTCAAGTGCTTCCTCTTTGGATGTTTTTACCAGCTCTGGAAATTTGGACCTGGAATCTAAAGTAAATCCTGTTCATCAAACTAAACTTAGAAGTTCCAAAAGCTTTGATAAGCACACATTGGAAAATCGGTCTGAATGTAGTGAGGAAGAGGGGAGGAAAATCTCAATAGCTTCTGTATTTGGGAAAGATAGTACCTGGTCCGGCTCTAATGGTATTCTTAAAAAGAAAATGCGGAGGAAGTGCAAAAGGATATCTCAAATCAAACTGAGTATGTTATACCATAGTGACGTGCTGGGCTCAACTGTTACTGACCAGGTACAGTCACTGAATGGTGATGCGTGCGACACTCAGGATCGGTCGGAGGAAGTTCAGGATTGTGTAGTTGACAGTGTTGGGAAAAAAGGGAACCAAAGGAAGTTATCAGGCAGTTCAATCCAGAGAAATATCAGGAAAACAAACAATAAGTCCAATGGATGCCAGATTGAAGATGACGATCTATTGGTGTCAGCAATATTCAAGAATAAGGACTTCAGCCCAAAGATAATCCGAGGTAATTCTAGAGCTAAGTCCGGAAGATCAAGGGGTTTGAGAAAGCTTAAAAGCCATAAAGGCCGTTGCAGGTTGTTACCAAGGAACCCTTGCAATGGAGGGAAGCAGAATAAGGATGGGAAGAAGTATTATCTCGGGGCAAGGACACTCTTGTCCTGGTTGATTGAGAATGGAGTCATATCTTTAAATGATGTCATTCAATACCGAAACCCTAAAGATAATTCTGTCACTAAGGATGGTAGGATCACCAAAGATGGAATTGTTTGTAAGTGTTGCAGTAAGGTGCTTACATTGTCAGAGTTCAAGATTCATGCTGGGTTTGCATTGAGTCGCCCTTGCTTGAACCTTTTCATGGGGTCTGGTGAGCCCTTTACACTTTGCCTCCTTCAAGCTTGGTCGGCTGAATACAAAGCTAGGAAAAGTCAAAATCAAGCTGTGAATGTTGTTGATAATGACAGAAATGATGACTCGTGCGGGTTGTGTGGTGAGGGAGGCGAGCTGATATGTTGTGATAGCTGTCCGTCTACTTTTCACCTGGCTTGTTTATCCGTCCAGGAGATCCCTGATGGCAACTGGTACTGCATAAACTGCACTTGTCGAATTTGTGGAAATTTGGTTAACGATAAAGAGGCTTTGGATGCACATGGTTCATTACAATGTTCACAATGCGAACATAAATATCATGAGAAATGCCTAGGAGAAGGAGATAAACAAGGAGCAGTTTCAGACTCTTGGTTTTGTGGTCAGAGTTGTCAGGAGGTATACTCCAGTCTACAATCTCAAGTGGGGCTAGTTAATCAAGTTGCTGATGGCTTCTCATGGACGCTTCTTAGATGCATACACGATGACCAAAAGGTTCATTCGGCCCAGTGGTTTGCCCTAAAGGCACTATGCAATACAAAATTAGCTGTTGCCCTTACCATCATGGAAGAGTGTTTCTTGTCAATGTTAGATCCAAGAACAGGCATTCACATGATACCCCAAGTTTTATACAATTGGGGGTCTGAGTTTGCTCGTCTGAATTTTCAAGGGTTTTACACCGTGGTGTTGGAGAAACAGGACGTTTTAATATCTGTAGCATCAATCAGGGTGCATGGAACTACAGCTGCAGAGATGCCTCTAATTGCAACTTGCAGTCGGTATCGTCGCCAAGGAATGTGCCGACTCCTTGTGAACTCAATTGAAGAGATATTGATATCTGTCAAGGTAGAAAAGCTTGTGGTATCAGCCATTCCTGATTTGGTGGAGACATGGACTAAGGGCTTCGGTTTCGTACCTGTTGATGACATGGAAAAGCGGCGATTGAAAAAAAACAATTTAATGGTTTTTCCTGGAACAGTGTTACTTGAAAAGTCCTTGTATGGCAAGAGAAGCGAAGGACTATGTAATCAATCCACTTTAGCAACAGATGAATCCTTCAAAGTAGGTATCTGTCCTGAAGGAGTCGCCGCCATAGCCGAATCATCACCGCAAGATGTTGGAAACAATGAAGTCGATGCTAAGTCAGAATATGAACCTATGGACTGCAAAAACCAACCAGACAATAGGGCTGGCAGTGAAACCAGCAGAGATGATAATACTCGAGCTGTTGAAACTGTATTAGAAGGCAAAGAATCAACAGAGACAAGTAAGTCTTTTGGTGAAGAGAAAATCATGCCTTTGATGGTGTCGGGTGGATCAGAAAAATCTATTGAAGAAAACAATGTGCAGGAATTGAGAACAAACAACAAAATGCAAATGGCTAGCGAGTTTTTACGACAGTCTTTTGAGAACTGTTGTGCCAACAAAGATGGTACTGAACCAGGTGTAAGACTTATTGAGGACAAGAATATCAAAATAGGTGAAGTTGAGGAAAATGCTTTGCATGGACATGTTTCAAATGTGTCCTGCAAAACATTTTCGGGCAACAATTTTGACACAGATTCTAATTTTGATTGCTCAGTGATGTATGATGGACCAGCTATTTTTGGAACATTAGCTAAGTCTGCAAAATCAATGGAAAGTTGA 4032 0.406 MEHLCDDNFEGSSEERKIFTDVFFGNNTFQFSQKRVVSGVIDLEHESNKNTLKSFGSSNENSFILRPSSSRFTHPEEDISVIQHSKETAAMGCFPESFTCEDQNDVDVNVKRMKFSLHEPPCSRSNSEDVLVSSAIPKVVVSNLDCAATDCDSEPIAFRTVESSKHGVISSCYVLKHNMVQNKQVSNDDVDVTNCKSKTEDGNIAKEVSVSKVVASPVSQESSANRLVVTSPSITVVKKSKSPLKTEEMPEGFQSSNMDVSNSLSKIDKEDTRSLLHFHVMQLFTMSGISVEKHQRPCRRYMESLYRTPKGKPIREFTKAWKLCSQLLSVEKYNVSYGGRKEWTNTSELWSDLSSALKNIEKSKTQSETAPMLAYQWWILDPFVVVIYIDRKIGALKRGEVIKATSSFASSKYNMARAPVDSACEDSFGAHSDQKHDQAILCDSSTATETTKTASVINYDACNQKSDGNQEDMYVVEHKPNIIENRCSTITHSSASSLDVFTSSGNLDLESKVNPVHQTKLRSSKSFDKHTLENRSECSEEEGRKISIASVFGKDSTWSGSNGILKKKMRRKCKRISQIKLSMLYHSDVLGSTVTDQVQSLNGDACDTQDRSEEVQDCVVDSVGKKGNQRKLSGSSIQRNIRKTNNKSNGCQIEDDDLLVSAIFKNKDFSPKIIRGNSRAKSGRSRGLRKLKSHKGRCRLLPRNPCNGGKQNKDGKKYYLGARTLLSWLIENGVISLNDVIQYRNPKDNSVTKDGRITKDGIVCKCCSKVLTLSEFKIHAGFALSRPCLNLFMGSGEPFTLCLLQAWSAEYKARKSQNQAVNVVDNDRNDDSCGLCGEGGELICCDSCPSTFHLACLSVQEIPDGNWYCINCTCRICGNLVNDKEALDAHGSLQCSQCEHKYHEKCLGEGDKQGAVSDSWFCGQSCQEVYSSLQSQVGLVNQVADGFSWTLLRCIHDDQKVHSAQWFALKALCNTKLAVALTIMEECFLSMLDPRTGIHMIPQVLYNWGSEFARLNFQGFYTVVLEKQDVLISVASIRVHGTTAAEMPLIATCSRYRRQGMCRLLVNSIEEILISVKVEKLVVSAIPDLVETWTKGFGFVPVDDMEKRRLKKNNLMVFPGTVLLEKSLYGKRSEGLCNQSTLATDESFKVGICPEGVAAIAESSPQDVGNNEVDAKSEYEPMDCKNQPDNRAGSETSRDDNTRAVETVLEGKESTETSKSFGEEKIMPLMVSGGSEKSIEENNVQELRTNNKMQMASEFLRQSFENCCANKDGTEPGVRLIEDKNIKIGEVEENALHGHVSNVSCKTFSGNNFDTDSNFDCSVMYDGPAIFGTLAKSAKSMES 1343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01988 1343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 817 892 IPR013083 -
Car01g01988 1343 ProSiteProfiles Zinc finger PHD-type profile. 830 875 IPR019787 -
Car01g01988 1343 Pfam PHD-finger 833 874 IPR019787 -
Car01g01988 1343 PANTHER PHD FINGER PROTEIN 12 2 504 IPR042163 GO:0003714|GO:0045892
Car01g01988 1343 PANTHER PHD FINGER PROTEIN 12 519 1337 IPR042163 GO:0003714|GO:0045892
Car01g01988 1343 PANTHER INCREASED DNA METHYLATION 1 2 504 - -
Car01g01988 1343 PANTHER INCREASED DNA METHYLATION 1 519 1337 - -
Car01g01988 1343 Gene3D - 998 1112 - -
Car01g01988 1343 Pfam Tify domain binding domain 755 805 IPR032308 -
Car01g01988 1343 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 981 1105 IPR016181 -
Car01g01988 1343 MobiDBLite consensus disorder prediction 1163 1203 - -
Car01g01988 1343 SUPERFAMILY FYVE/PHD zinc finger 873 923 IPR011011 -
Car01g01988 1343 SMART PHD_3 832 873 IPR001965 -
Car01g01988 1343 SMART PHD_3 874 927 IPR001965 -
Car01g01988 1343 MobiDBLite consensus disorder prediction 241 260 - -
Car01g01988 1343 CDD PHD_SF 873 922 - -
Car01g01988 1343 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 982 1129 IPR000182 GO:0016407
Car01g01988 1343 CDD PHD1_AIRE 833 872 - -
Car01g01988 1343 SUPERFAMILY FYVE/PHD zinc finger 818 873 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01988 Car-Chr1 45020842 45028435 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01988 1 405 PHD Transcription Factor Family AT3G14980 30.244 2.73e-39 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car01g01988 TDBD 1.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01988 - - mtr:MTR_2g078040 2065.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01988 01 45020842 45028435 Car01g01988 01 45020842 45028435 ECH