Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01986 ATGTCGCATTCATCGGAAAAACCCGAATCAGAGGTTGTCGGGTTAGAACATTTTTCCGATCGGTTCAGTGAAAAAGTGAGCTTCGAAGTTAACAAACCGGACTTTCGTGAACTCGATCTGGGTTCACCCGTTTCGCCATTGCGAACACGTGGTGGACCTTCAGCGAGTAGTAGTTCAGGTTCTTCTGGATCTTTCTCTGGTCGAAATAATGGGTTAAACCAGGTTCAAAAAAGATCCAATTCAGCCCCTGGAAACAGTAACTCCGGCGAACTTTCTGGTTCTAGTGAGAACAGTCCAACCGCAGAGAGATCTACATCTACCGGGAATCTAAAGGCTTCCAAACCGGGTCATTTGAGATCCGATTCAGGATCCGGATTGACTCCTTTGATTTATTCCGGTCAAGCTGTCAATTCGCCGCCGTTGAATGTTCTTCCTACCGGTAACATATGTCCCTCCGGTAGGATCTCCAAGATTGGTATGTCGGCGAATCGGAGTTCAAGAACTGATGTTCTTGGTTCTGGAACTGGAAACTATGGCCATGGCAGCATAATGCGCGGTGGCGCCGCCGTTGTCGCCGCCAAGGGTGAGATTCATAGTTCTAGGTGTAGCATTGGGAATGATTTGGGGAAAAGAGGTGTGGATCCGGAAGAGCTTAAGAAAGCAGGGAATGAGCATTACAAGAAGGGTCATTTTGCAGATGCATTGAGTCTTTATGACCGTGCAATTGCTTTGTCTCCGGCCAGTGCTTCTTACCGGAGCAACCGTGCCGCGGCGTTGACTGGTTTAGGAAGGCTTGGTGAGGCTGTTAGGGAATGTGAAGAGGCTGTCAGATTGGATCCTAATTATATTAGGGCTCATCATCGTTTGGCTTCTCTATTCATCAGGTTAGGACAAGTTGAGAATGCTAGGAAGCATCTTTGTTATCCTGGAATGCAGCCCGATCCGAACGAGATGCAGAAGTTGCAAATGGTGGAAAAGCATATTAGTAAATGCGCAGATGTTAGGAGGATAGGGGATTGGAAAAGTGTTTTAAGGGAAGTTGATGCTGTTGTTGCTGCTGGAGCAGATTCTTCTCCTCAGCTCTTTATGTGTAGAGCAGAAGCCCTTTTGAAACTCCATCAAATTGATGATGCAGAATCAGTTTTGTTACATGTTCCAAAATCGGAGCCACATACTAATAGTAAGAGCAATTCCTCTTCTCAAGCAAGATTTTTCGGGATGGTTTCAGAAGCTTATTCCTACTTTGTCAGAGCTCAAATTGAGATGGCATTGGGAAGGTTTGAGAATGCAGTAACAGCTGCTGAGAAGGCGAGTCAGATTGATTCGCGAAATCTTGAAGTTGTTGTTTTGCTTAGCAATGTAAGGATGGTGGCAAGAGCTCGAGTTCGTGGCAACGATCTTTTTAAATCCGAACGGTTCACGGAAGCTTGCGCAGCATACGGTGAAGGTTTGAGATTGGACCCTTCAAATTCAGTTCTATATTGTAATAGAGCAGCGTGTTGGTTTAAGCTTGGTCAATGGGAAAAATCAATTGAAGACTCTAACCAAGCTTTACATATCCAGCCAAATTATACAAAAGCCCTTCTTCGAAGGGCTACATCGTTCGCCAAGCTAGAAAGGTGGGAAGAAGCAGTCAAAGATTACGAGGTCTTACGGAAAGAACTTCCAAACGACAATGAAGTTGCTGAAGCTCTTTTTCATGCACAAGTTGCGCTAAAGAAATCACGTGGAGAAGAAGTATATAATTTAAAGTTTGGTGGTGAAGTTGAAGTAGTATCAGGTCTTGAACAGTTTAGAGCTGCAATATCTTTACCAGGTGTTTCTGTTGTCCATTTCGAAGTTGCATCTAACTCGCAATGCAAGCAAATATCGCCATTTGTCGATACACTATGTAGTCGATATCCATCTATTAACTTCCTCAAGGTGGACATTCAAGAAAACCCGACAGTTGGAACTGCAGAGAACGTAAGGATTGTTCCAACCTTCAAGATATACAAAAACGGAAGCCGAGTGAAGGAAATTGTATGCCCTAGTCGAGACATGTTGGAACATTCTGTGAGGCATTACAGCTTTTAG 2076 0.4436 MSHSSEKPESEVVGLEHFSDRFSEKVSFEVNKPDFRELDLGSPVSPLRTRGGPSASSSSGSSGSFSGRNNGLNQVQKRSNSAPGNSNSGELSGSSENSPTAERSTSTGNLKASKPGHLRSDSGSGLTPLIYSGQAVNSPPLNVLPTGNICPSGRISKIGMSANRSSRTDVLGSGTGNYGHGSIMRGGAAVVAAKGEIHSSRCSIGNDLGKRGVDPEELKKAGNEHYKKGHFADALSLYDRAIALSPASASYRSNRAAALTGLGRLGEAVRECEEAVRLDPNYIRAHHRLASLFIRLGQVENARKHLCYPGMQPDPNEMQKLQMVEKHISKCADVRRIGDWKSVLREVDAVVAAGADSSPQLFMCRAEALLKLHQIDDAESVLLHVPKSEPHTNSKSNSSSQARFFGMVSEAYSYFVRAQIEMALGRFENAVTAAEKASQIDSRNLEVVVLLSNVRMVARARVRGNDLFKSERFTEACAAYGEGLRLDPSNSVLYCNRAACWFKLGQWEKSIEDSNQALHIQPNYTKALLRRATSFAKLERWEEAVKDYEVLRKELPNDNEVAEALFHAQVALKKSRGEEVYNLKFGGEVEVVSGLEQFRAAISLPGVSVVHFEVASNSQCKQISPFVDTLCSRYPSINFLKVDIQENPTVGTAENVRIVPTFKIYKNGSRVKEIVCPSRDMLEHSVRHYSF 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01986 691 MobiDBLite consensus disorder prediction 1 126 - -
Car01g01986 691 CDD TRX_family 596 683 - -
Car01g01986 691 Pfam Tetratricopeptide repeat 412 442 IPR019734 GO:0005515
Car01g01986 691 Pfam Thioredoxin 596 682 IPR013766 -
Car01g01986 691 MobiDBLite consensus disorder prediction 49 113 - -
Car01g01986 691 ProSiteProfiles TPR repeat profile. 491 524 IPR019734 GO:0005515
Car01g01986 691 Gene3D Glutaredoxin 584 690 - -
Car01g01986 691 SUPERFAMILY TPR-like 215 447 IPR011990 GO:0005515
Car01g01986 691 Gene3D Tetratricopeptide repeat domain 213 577 IPR011990 GO:0005515
Car01g01986 691 Pfam Tetratricopeptide repeat 527 557 IPR019734 GO:0005515
Car01g01986 691 MobiDBLite consensus disorder prediction 1 36 - -
Car01g01986 691 Pfam Tetratricopeptide repeat 221 282 - -
Car01g01986 691 SUPERFAMILY Thioredoxin-like 494 689 IPR036249 -
Car01g01986 691 ProSiteProfiles TPR repeat profile. 215 248 IPR019734 GO:0005515
Car01g01986 691 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 23 689 - -
Car01g01986 691 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 23 689 IPR044534 -
Car01g01986 691 SMART tpr_5 491 524 IPR019734 GO:0005515
Car01g01986 691 SMART tpr_5 457 490 IPR019734 GO:0005515
Car01g01986 691 SMART tpr_5 215 248 IPR019734 GO:0005515
Car01g01986 691 SMART tpr_5 249 282 IPR019734 GO:0005515
Car01g01986 691 SMART tpr_5 525 558 IPR019734 GO:0005515
Car01g01986 691 SMART tpr_5 411 444 IPR019734 GO:0005515
Car01g01986 691 SMART tpr_5 359 392 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01986 Car-Chr1 44971156 44975242 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01986 456 601 U-box Gene Family AT3G07370 30.055 9.58e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01986 - - gmx:100795358 1038.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01986 01 44971156 44975242 Car01g01986 01 44971156 44975242 ECH