Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01983 ATGGTGGACACAAAGCAACTTGTATCAGCAATGACCTCTATAGTACTTATGCGAACCATCACCAATGAAATCATTCCTCATGAGCTTATAGCTTTTCTTCACTCCGGAATTGCTCATCTTTTTCGCCAATTCTCCGTTCAATTCACCGTTGTCATCGAAGAATTTCAAGGCATGGCAAGAAACCAAGTTTTCGAGGCTGCCGAAGCCTATCTTGGAACTAAAGCAACCATCTTAGCAGAAAGAGTTAAAGTAAGTAAATCAGAGGATCATAAAAACCTTGCATTCAACATAGATAGAGATGAAGAAATAAGTGATAAATTTGAAGGTGTTAGAGTTAAGTGGAAACTAATTTGCATACAAGTTGATTCGTCTCGAATTCGACATTATGATAATAACTCTTCTCCATTGTCAGAGATAAGATCCTATGAGCTTACTTTCCACAAAAAACACAAGAACAAAGTCTTCAATTCATATTTACCTTACGTGATGGAAAAGGCAAGGGAAGTTAAACAAGGAAGCATGGAAATTAAGATTCACTCAAATGAATATTATTCTTGGTGTAATGAACCTGTTAAGTTTAATCATCCAATGAGTTTCAAAACTCTTGCAATTGATGAAGAGCTTCAAAGAGATATTGTCAATGATTTGGATAATTTTGTGAAGGCTAAAGAGTTTTATAGAAAAACAGGAAAAGCTTGGAAACGTGGTTACTTGTTGTATGGTCCTCCTGGTACTGGAAAATCAAGTTTGATTGCATCTATGGCTAATTATCTTAATTATGATATATATGATTTGGATCTCACTCAAGTAGGTGATAATAGGTGTTTGAGGCAATTGGTTCTTGGCATGTCTAACCGTTCTATACTTGTCATTGAAGATATTGATTGTACTATAAACTTGCATAACAGAGAAGATGGTGAAGAAGTTGTTGATAATGGACAAAATAAGGTGACACTTTCAGGACTATTGAATGCTGTAGATGGTCTATGGTCATGTTGTGGAGAGGAACACATAATTGTTTTCACAACAAATCATAAAGACAGGCTTGATCCTGCTCTGTTAAGGCCTGGAAGAATGGACAAACAAATTCATTTGTCATATTGCAACTTCTCTGCTTTTAAACAATTGGTCATCAACTACCTTGACATCACTCAACATGAACTCTTTGAAAAGATTGAAGTGCTTCTTGGACAAGTTCAAGTTACTCCAGCTGAAATTGCAGAAGTGCTTACAAAGGTTGGTGATGCCACTGAATGCCTGCAAGACCTTATCAAATTCCTTGAAGACAAGAAAATGGTCAAGGAAGAGATTAAGAATGAAGAAAATGTCAAAGAAGATGATGAACTAAGTATAGAAAATATATAG 1365 0.356 MVDTKQLVSAMTSIVLMRTITNEIIPHELIAFLHSGIAHLFRQFSVQFTVVIEEFQGMARNQVFEAAEAYLGTKATILAERVKVSKSEDHKNLAFNIDRDEEISDKFEGVRVKWKLICIQVDSSRIRHYDNNSSPLSEIRSYELTFHKKHKNKVFNSYLPYVMEKAREVKQGSMEIKIHSNEYYSWCNEPVKFNHPMSFKTLAIDEELQRDIVNDLDNFVKAKEFYRKTGKAWKRGYLLYGPPGTGKSSLIASMANYLNYDIYDLDLTQVGDNRCLRQLVLGMSNRSILVIEDIDCTINLHNREDGEEVVDNGQNKVTLSGLLNAVDGLWSCCGEEHIIVFTTNHKDRLDPALLRPGRMDKQIHLSYCNFSAFKQLVINYLDITQHELFEKIEVLLGQVQVTPAEIAEVLTKVGDATECLQDLIKFLEDKKMVKEEIKNEENVKEDDELSIENI 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01983 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 428 IPR027417 -
Car01g01983 454 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 4 442 - -
Car01g01983 454 Gene3D - 188 363 IPR027417 -
Car01g01983 454 Gene3D - 364 434 - -
Car01g01983 454 Pfam ATPase family associated with various cellular activities (AAA) 238 366 IPR003959 GO:0005524|GO:0016887
Car01g01983 454 PANTHER BCS1 AAA-TYPE ATPASE 4 442 - -
Car01g01983 454 CDD AAA 234 367 - -
Car01g01983 454 SMART AAA_5 233 369 IPR003593 -
Car01g01983 454 Coils Coil 437 454 - -
Car01g01983 454 Pfam Domain associated at C-terminal with AAA 25 117 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01983 Car-Chr1 44940400 44941950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01983 221 369 Calmodulin-binding Proteins AT3G56690 29.114 1.29e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01983 K08900 - gmx:100778503 575.859