Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01972 ATGTCGTTAATGAAGGCCTTTCGTTCTCGCAAAATCTCGAGATCTTTCAAGGAGGTTCAAACTCTCGATGCTGCCTGCGATGATCGGAGAGGAATTTCCGACGGTGCATCGGTGGATGGAACTGATTGGGCCACCATGCTTCCGGATCTCCTTGCGGAGATTATTAAACGAGTGGACGACGCCGAGGAACAGTGGCCGCATCGTCAAAACGTCGTTGCTTGCGCCTGCGTTTGCAAACGGTGGAGAGATATCACACGCGAGATCGTACGGTCGCCTTCACGTAACGGCAAAATTACTTTCCCCTCTTGTCTTAAACAGCCAGGACCACGTGACCTTCCTCACCAATGTCTTATAAAACGGAATAAGAAGACCTCTACATTTTACCTCTATCTTGCCCTTACACCATCATTCACAGATAAAGGGAAGTTTCTATTAGCAGCTAGAAGATATAGGTGTGGCACCCATATTGAGTATGTTATATCGCTTGATGCTGATGACTTATCACAAGGAAGCAATGCTTATGTTGGAAAGCTAAGCTCCGATTTTCTTGGTACCAACTTCACAATTTTTGACAGCCAGCCTCCCCATAATGGTGCCAAACCATTAAGTGGCAAGGCTAGCCGACGTTTTGCCAGCAAACAGATAAGCCCTCAAGTTCCTGCTGGTAACTTTGAGGCAGGGCTTGTCTCCTACAAGTTCAACCTTATGAAATCAAGAGGTCCAAGGAGAATGATTTGCTCTTTGAAATTTCCTGTCTCATCAATGGGTGAAAGGTCAGATAGCAGATCTTTAGATGGCAAAAAGATGCACCATAAAGAACATGTTTCTTCCGGTTACACAACCTTGAAGAATAAAGCTCCAAGGTGGCACGAGCATTTGCAATGCTGGTGCTTGAACTTTCATGGTCGTGTTACAGTGGCATCTGTGAAGAACTTTCAGCTGGTTGCTACTGTGGACCAAAGCCAACCAGGAGGGAAAGGAGACGAAGAAAAAGTTCTTCTTCAGTTTGGTAAAGTAGGGGATGATACTTTCACTATGGACTATAGGCAACCCTTATCTGCCTTTCAGGCATTTGCCATTTGCTTAACTAGTTTTGGCACTAAACTGGCTTGTGAGTAA 1119 0.4531 MSLMKAFRSRKISRSFKEVQTLDAACDDRRGISDGASVDGTDWATMLPDLLAEIIKRVDDAEEQWPHRQNVVACACVCKRWRDITREIVRSPSRNGKITFPSCLKQPGPRDLPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHIEYVISLDADDLSQGSNAYVGKLSSDFLGTNFTIFDSQPPHNGAKPLSGKASRRFASKQISPQVPAGNFEAGLVSYKFNLMKSRGPRRMICSLKFPVSSMGERSDSRSLDGKKMHHKEHVSSGYTTLKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEEKVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01972 372 Pfam Tub family 104 367 IPR000007 -
Car01g01972 372 MobiDBLite consensus disorder prediction 257 277 - -
Car01g01972 372 MobiDBLite consensus disorder prediction 260 277 - -
Car01g01972 372 Gene3D - 36 92 - -
Car01g01972 372 SUPERFAMILY F-box domain 42 86 IPR036047 GO:0005515
Car01g01972 372 PRINTS Tubby superfamily signature 158 174 IPR000007 -
Car01g01972 372 PRINTS Tubby superfamily signature 174 198 IPR000007 -
Car01g01972 372 PRINTS Tubby superfamily signature 223 250 IPR000007 -
Car01g01972 372 PRINTS Tubby superfamily signature 282 299 IPR000007 -
Car01g01972 372 PRINTS Tubby superfamily signature 300 316 IPR000007 -
Car01g01972 372 PRINTS Tubby superfamily signature 329 348 IPR000007 -
Car01g01972 372 PRINTS Tubby superfamily signature 350 372 IPR000007 -
Car01g01972 372 PANTHER TUBBY-RELATED 7 372 - -
Car01g01972 372 Gene3D Tubby Protein; Chain A 99 372 IPR025659 -
Car01g01972 372 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 7 372 - -
Car01g01972 372 ProSitePatterns Tub family signature 2. 357 372 IPR018066 -
Car01g01972 372 SUPERFAMILY Tubby C-terminal domain-like 93 372 IPR025659 -
Car01g01972 372 Pfam F-box domain 48 90 IPR001810 GO:0005515
Car01g01972 372 ProSitePatterns Tub family signature 1. 300 313 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01972 Car-Chr1 44789793 44794714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01972 1 372 TUB Transcription Factor Family AT1G53320 70.976 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Car01g01972 Tub 1.5e-99 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01972 K19600 - gmx:100808096 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01972 01 44789793 44794714 Car01g01972 01 44789793 44794714 ECH