Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01970 ATGATGAAGAGAAATAATTTGAGCACAAACTTGAAGGGCTATAACACTTACAAGAGTGAAATGACAAAAGAGTTTTGTGACTTAAACTCTCAAAGtaataataataataacaatGGATCATCATGTGAGGATTACATGAATGGATTTCCATGGCCACCAAGATCATACACATGTAGCTTTTGTAGAAAAGAATTCAAATCAGCTCAAGCACTTGGTGGTCACATGAATGTTCATAGAAGAGATAGAGCAAGGCTTAGACAATCATCACCAATTGAAGTTCAAGTTCAACAACCTCAAACTCAAAATCAAGGTTCTATGCTTAATTTTAACCTTAATAACCACCCTATTATTACTACTACTAACCCTTATAATAACTTTTTTTCAAACTCATCTTTGTCCTTATTTCAACCATCTTCATCTTCTTCTTCAGCAACAACTCTTAAGCCTATTACTTGCACATTACCTTTGTTTGTTTCATCTTCTTCTACTTCACCTTCACCTTCACCTTGTGAGTTTAATAAATATATCTTGTTGAACCCTTTGAGCACAAAGACCAAAGAGCCCTTCATAAATTCAAAGATGGTAGAAGAATCTTTATCTAGGGTTGGAGAATGTGATGATTTTGCATGTGAAGATGATGAGTGTAGAATGTTGAAGAAAAGTGAGATTTTAAGGATGGATTTGGAGATAGGTTTGCCAAGAGATTATGATGATAATTTGGATCTTGAGCTTCGTTTGGGTACCACCACTTACTCTTAA 759 0.3412 MMKRNNLSTNLKGYNTYKSEMTKEFCDLNSQSNNNNNNGSSCEDYMNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSSPIEVQVQQPQTQNQGSMLNFNLNNHPIITTTNPYNNFFSNSSLSLFQPSSSSSSATTLKPITCTLPLFVSSSSTSPSPSPCEFNKYILLNPLSTKTKEPFINSKMVEESLSRVGECDDFACEDDECRMLKKSEILRMDLEIGLPRDYDDNLDLELRLGTTTYS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01970 252 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 251 - -
Car01g01970 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Car01g01970 252 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Car01g01970 252 SMART c2h2final6 56 78 IPR013087 -
Car01g01970 252 Gene3D Classic Zinc Finger 52 116 - -
Car01g01970 252 SUPERFAMILY beta-beta-alpha zinc fingers 53 82 IPR036236 -
Car01g01970 252 Pfam C2H2-type zinc finger 56 80 - -
Car01g01970 252 PANTHER OS07G0101800 PROTEIN 3 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01970 Car-Chr1 44723435 44724278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01970 32 247 C2H2 Transcription Factor Family AT3G23130 36.697 5.14e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car01g01970 zf-C2H2_6 1.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01970 - - var:108333719 205.682