Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01954 ATGGAGAATCTATTTGGGCTTAGCAAAAAGGCAATGAAAGAAGAGCTATTAAGAGGACGTGACATGGCAAATCAATTACTTGAAGTACTAAGTTGTGATGATAAGTCAAATAAAGAAGTAAAAGGGTCAATGTTATCCTTAATTGCTCAAGATCTTGTGGGTGAAGTACTCAAATCATTGACAAATACGCTTTTGCTCTTAAACAACAAAGAAGATTCCAATGATGTGGGGGTTCCTATAACTGTTGGAAATATTTCTTTGTTGACGAATTTCAACAAGATGGAGGAAGATTTGGATGGATCTTGCAAGAAACTCAAGACTCTCAACACCAAAAATCTAAAAGGGTCAAACAAGAGAAAGTCAATTGCACTAACTTGGGAAAAGAACACCTCAATATTGATAGATGATGGTCATACATGGAGAAAATACGGACAAAAAAAGATAACAAATGCAAAATACTTCAGGAGTTACTATAGATGCACTCACATGTATGATCAACATTGTGAAGCAATGAAACATGTTCAAAGAACTCAAGAGAACCCTCCATTGTATAAAACTACATATTATGGCCATCACAGTTGCAAAAGCTCTTTCCATTCCGATATAACTTTTGAATCAATTTTATCTTCGGATTCGGACTCTAATTCTATATTACTTAATTTTGATAACAATATTCCATGTAAACAAGAATATTCGTTTTGGTCGCCGTCGTCGTTGCCGCCACTTGTATCTACAAAAGGGGAGCCCATGGAAGTGAATCAAGTGATCCAAGATACTGATCATTTAGCTCAAAATCAATTGGTATCATCAAAGAATCTCTTATTATGTGATTTTGATGTTTATTTCGATTATTTAAGGCATGCCACTATGTTATCATCGACTGAAACCGTTGAACTTGAGAATGTTTGTAGTCAGTTTGGATTTTGA 927 0.3484 MENLFGLSKKAMKEELLRGRDMANQLLEVLSCDDKSNKEVKGSMLSLIAQDLVGEVLKSLTNTLLLLNNKEDSNDVGVPITVGNISLLTNFNKMEEDLDGSCKKLKTLNTKNLKGSNKRKSIALTWEKNTSILIDDGHTWRKYGQKKITNAKYFRSYYRCTHMYDQHCEAMKHVQRTQENPPLYKTTYYGHHSCKSSFHSDITFESILSSDSDSNSILLNFDNNIPCKQEYSFWSPSSLPPLVSTKGEPMEVNQVIQDTDHLAQNQLVSSKNLLLCDFDVYFDYLRHATMLSSTETVELENVCSQFGF 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01954 308 Gene3D WRKY domain 117 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car01g01954 308 SMART WRKY_cls 134 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g01954 308 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 1 301 IPR044810 GO:0003700
Car01g01954 308 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 301 - -
Car01g01954 308 ProSiteProfiles WRKY domain profile. 129 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car01g01954 308 SUPERFAMILY WRKY DNA-binding domain 130 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car01g01954 308 Pfam WRKY DNA -binding domain 135 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01954 Car-Chr1 44439955 44443246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01954 15 194 WRKY Transcription Factor Family AT3G56400 35.912 1.96e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Car01g01954 WRKY 1.7e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01954 - - gmx:100792193 280.026