Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01947 ATGTCAAGCTTCAAACATGTTTCTTTGTTCTTCTTTTTGTCCATGGCTTTTAATTTTCCACAAAAGTTTGGATCCAACGCTCAACTTTTACCACAAGATGAAGTGAAATTACTACAAACAATATCAGACAAGGTAGATAACTTGAATTGGAAGGTTACAGAACATTCTTGCAATGGGGATAAAGGATTTGGTAATGCTAATATTTTAGAGGATCAAATCACAAGGAATGTCACGTGTGATTGCTCTTTCAATGCTAGCACTGTTTGCCATGTCACATTGATCTTGCTCAAGGGTATCAATATATCTGGAGTTTTTCCCACTGAATTTGGAAATCTTACTCATCTCAAAATACTTGATCTCACTAGGAATTATCTAAATGGCTCAATTCCAAAGAGTCTTGGACACCTCTCACTTGTGACACTGTCACTTTTGGGAAATAGACTCAGTGGTACAATTCCCTCAGAAATTGGTGATATTGCCACCCTGCAAGAATTGAACTTTGAAGATAATGAACTTGGAGGGCCTCTTCCTCCTAGCCTTGGAAATTTGAAAAACTTGCAGAAATTGATGCTTTCTGCAAATAATTTTACAGGACAAATACCAGAATCATTTGGTAATCTAAAGAATCTCAGTAATTTTAGGATAGATGGAAGCAGTTTATCTGGAAAGATCCCAAGTTTTATTGCAAATTGGACCAAACTTGATAGATTGGATTTGCAAGGTACAAATTTGGAAGGTCCAATTCCCCCTGCTGTATCTCTGTTGAAAAGTTTGACAGAATTGAGAATATCTGATTTGAAGGGACCAACCATGACATTTCCTGATCTGAAGGATTTGAAACGAATGATAAGATTGGAATTGAGAAATTGCTTAATCACTGGTCCCATTCCTGACTACATTGGTGAAATGAAAAATTTAAAAACTCTAGATTTGAGCTCCAACAGATTGACTGGTCCGATCCCAGATTCATTTCAGGACTTGGAATCAATCAATTTTATGTTCCTGACTAACAACTCTCTGAATGGAACAATTCCAGGATGGATTCTGAGCAACAAAAAGAACTTTGATTTATCTTTCAACAACTTTACATCATCTTCTGCATCTGAATGCCAGCCGTTGGATGTGAACTTAGCTTCCAGCCACTCTCCTTCAGCAAACACTTCATTGTCTTGTTTGAAGATGGGCCTTCCTTGTTCAGGAAAACCTCGGTATCATTCACTATTCATAAATTGTGGAGGACCTGCAACTGAGTTTGATGACAATGAATATGAAGACGACGGACATCTACGTGGAATTTCAAGCTTTTCTCAAAGTGTTGATGGAAAATGGGCTTATAGCAGCACAGGAGTATTTCTAGGAAATGAAAAAGCTGATTATGTGGCAAAAAATGTGTTCTCTTTGAATATTAACGGTTCCGAATACTATCAAACAGCGCGCATTGCCCCAATATCTCTTAACTACTTTGGCTTTTGTATGATGAAAGGAAATTATAAAGTGAAACTTCATTTTGCTGAGATAATGTTTTCTAATGACCATACTTTCAGCAGCCTTGGAAGGCGCATATTCGATGTTTCAATTCAAGGTTTTAAATATTTGAAAGATTTTAACATTGTGGAAGCAGCTGGTGGAGTTGGCAAAGGAATCACTAGGGAGTATAATGTTGATGTTAATGATAGCACTTTGGAAATCCACTTATCTTGGGCAGGAAAAGGAACTAACGCAATTCCTAATAGAGGTGTATATGGACCTCTTATATCTGCCATCACTGTGACTCCAAACTTTAAAATTCCTTCAAATGGGTTGTCTTCTGGAGCAATTGCTGGAattgtgattggatcattggtgcttgtgattctgatACTCTTTGTCCTTTGGAAGATGGGTTACATTTGTAGGAAAGATCAAACTGACAAAGAGCTCCTAGAATTGAAAACAGGCTATTTTAGTCTGAGACAAATTAAGGCTGCTACTAATAACTTTGATCCAGAAAATAAGATAGGCGAAGGAGGATTTGGTCCAGTTTACAAGGGTGTACTGTCAGATGGTGCTGTGATTGCTGTTAAACAGCTCTCTTCGAAATCAAAGCAAGGGAACCGCGAATTCGTTAACGAAATAGGCATGATATCTGCTTTGCAACATCCAAATCTTGTCAAGCTTTATGGCTGTTGCATTGAAGGAAACCAATTGCTGCTTGTATATGAATACATGGAGAACAATAGTCTTGCTCGCGCTCTTTTCGGCAAACAAGAACAACGGTTGAACTTGGAATGGCACACGAGAATGAAGATCTGTGTGGGGATAGCGAGGGGTTTAGCTTATCTTCATGAGGAATCAAGGTTGAAAATAGTTCACAGGGATATTAAGGCGACGAATGTCTTACTTGATAAGCATCTGAATGCCAAGATCTCTGACTTTGGTTTAGCCAAGCTTGATGAAGAAGAGAATACTCATATCAGCACGCGAATCGCTGGGACAATAGGTTACATGGCTCCTGAATATGCTATGCGGGGTTACTTGACTGACAAAGCAGATGTCTATAGCTTCGGAGTTGTAGCTTTGGAGATTGTTAGTGGAATGAGCAACACAAATTATAGGCCTAAAGAGGAGTTTGTTTATCTTCTGGATTGGGCCTATGTTCTCCAAGAACAAGGAAATCTTCTGGAATTGGTGGATCCAAGTCTTGAATCAAAATACTCCGCAGAAGAAGCCATGAGAATGCTGCAATTGGCACTCCTTTGCACCAATCCATCTCCAACTCTTAGACCACCAATGTCATCTGTAGTGAGCATGCTTGAAGGAAAAACTCCGATTCAAGCGCCGATAATCAAACGCAGCGATAGTACAAATGGTGTAAGGTTTAAAGCCTTTGAGACTCTATCACAAGATAGCCAAAGTCATGTTTCTTCTACATTCTTACAAGATAGTAGAGAGCTAACAGTAAAATCAATGGATGGACCATGGATTGACTCTTCCATATCTCTTCCAAGTAAAGATGATTATTCTTCATCTGATAAGCTTATTTGA 3024 0.3819 MSSFKHVSLFFFLSMAFNFPQKFGSNAQLLPQDEVKLLQTISDKVDNLNWKVTEHSCNGDKGFGNANILEDQITRNVTCDCSFNASTVCHVTLILLKGINISGVFPTEFGNLTHLKILDLTRNYLNGSIPKSLGHLSLVTLSLLGNRLSGTIPSEIGDIATLQELNFEDNELGGPLPPSLGNLKNLQKLMLSANNFTGQIPESFGNLKNLSNFRIDGSSLSGKIPSFIANWTKLDRLDLQGTNLEGPIPPAVSLLKSLTELRISDLKGPTMTFPDLKDLKRMIRLELRNCLITGPIPDYIGEMKNLKTLDLSSNRLTGPIPDSFQDLESINFMFLTNNSLNGTIPGWILSNKKNFDLSFNNFTSSSASECQPLDVNLASSHSPSANTSLSCLKMGLPCSGKPRYHSLFINCGGPATEFDDNEYEDDGHLRGISSFSQSVDGKWAYSSTGVFLGNEKADYVAKNVFSLNINGSEYYQTARIAPISLNYFGFCMMKGNYKVKLHFAEIMFSNDHTFSSLGRRIFDVSIQGFKYLKDFNIVEAAGGVGKGITREYNVDVNDSTLEIHLSWAGKGTNAIPNRGVYGPLISAITVTPNFKIPSNGLSSGAIAGIVIGSLVLVILILFVLWKMGYICRKDQTDKELLELKTGYFSLRQIKAATNNFDPENKIGEGGFGPVYKGVLSDGAVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYMENNSLARALFGKQEQRLNLEWHTRMKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKHLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGMSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLESKYSAEEAMRMLQLALLCTNPSPTLRPPMSSVVSMLEGKTPIQAPIIKRSDSTNGVRFKAFETLSQDSQSHVSSTFLQDSRELTVKSMDGPWIDSSISLPSKDDYSSSDKLI 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01947 1007 Gene3D Phosphorylase Kinase; domain 1 626 735 - -
Car01g01947 1007 Pfam Leucine rich repeat 284 340 IPR001611 GO:0005515
Car01g01947 1007 Gene3D Ribonuclease Inhibitor 163 268 IPR032675 -
Car01g01947 1007 Gene3D Ribonuclease Inhibitor 35 161 IPR032675 -
Car01g01947 1007 Pfam Leucine Rich Repeat 114 136 IPR001611 GO:0005515
Car01g01947 1007 Gene3D Transferase(Phosphotransferase) domain 1 736 947 - -
Car01g01947 1007 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 378 977 - -
Car01g01947 1007 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 292 348 - -
Car01g01947 1007 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 69 292 - -
Car01g01947 1007 SUPERFAMILY Protein kinase-like (PK-like) 643 932 IPR011009 -
Car01g01947 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Car01g01947 1007 Pfam Malectin domain 407 588 IPR021720 -
Car01g01947 1007 ProSiteProfiles Protein kinase domain profile. 660 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01947 1007 PANTHER - 292 348 - -
Car01g01947 1007 PANTHER - 69 292 - -
Car01g01947 1007 PANTHER - 378 977 - -
Car01g01947 1007 SMART LRR_typ_2 112 136 IPR003591 -
Car01g01947 1007 SMART LRR_typ_2 303 326 IPR003591 -
Car01g01947 1007 SMART LRR_typ_2 183 206 IPR003591 -
Car01g01947 1007 Gene3D Ribonuclease Inhibitor 269 375 IPR032675 -
Car01g01947 1007 Pfam Protein tyrosine and serine/threonine kinase 663 931 IPR001245 GO:0004672|GO:0006468
Car01g01947 1007 ProSiteProfiles Leucine-rich repeat profile. 305 326 IPR001611 GO:0005515
Car01g01947 1007 SUPERFAMILY L domain-like 75 367 - -
Car01g01947 1007 SMART serkin_6 660 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01947 1007 CDD STKc_IRAK 666 933 - -
Car01g01947 1007 Gene3D - 405 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01947 Car-Chr1 44197308 44208347 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01947 2 998 Receptor kinase-like Gene Family AT1G53440 63.330 0.0 1263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Car01g01947 PK_Tyr_Ser-Thr 1.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01947 - - gmx:121173337 1555.04