Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01944 ATGAAAATAACATTGCCTCTATTATTCCATCTTTTGTTTCTTGCCTTTTGTTTGATCTCTTCATTTGCTAGTGGAGCTACTCTATTAGAAGAAGAAGCACAAGTTATGAAAGACATAGCTAAGACACTTGGGAAGAAGGATTGGAACTTCAGCATAGATCCATGTAGTGGAAAAAATAACTGGGTATCTTCTGTGCAAGTGAAAGGGTTTGAAAATGCTGTCACATGCAATTGCTCTTTTGACAATGCAACTGTCTGCCATATTGTTAGCATTGTTCTCAAGTCACAAAATCTTTCAGGCACACTTCCAAGGGAATTTGTGAGATTACCTTACCTCCAAGAAATTGATCTCACACGTAACAACCTTAATGGTACAATCCCTCCGCAATGGGGATCCATCAATCTTGTTAACATTTCACTATATGGAAACCGATTAACGGGTCAAATCCCAAAAGAACTTGGAAAAATCATCACCCTAAAAAGCTTGGTTCTAGAATTCAATCAATTATCTGGAAAGCTTCCTCCAGAGCTTGGAAATCTTCACCAGCTTGAAAGACTGCTTCTTACCTCCAACAATTTTACTGGAAATTTACCCGCAACATTTGCTAAACTCACTAAACTGAAGCACATTCGACTTGGCGACAATCAATTCTCTGGAACTATACCTGATTTCATTCAGAGTTGGACAAGTCTTGAGAGGCTAGTGGTGCAAGGGAGTGGTTTCAGTGGCCCAGTTCCTTATGGAGTTTCTTATCTGAAAAACCTAACTGACTTGAGAATAAGTGACTTGAAAGGATCAGATTCGCCTTTTCCACAACTTATTAACTTGACAAACCTGGAAACATTAGTACTGAGGAGTTGCAATCTTATAGGAGCAGTTCCTGAATATCTTGGAAATATTACCAACTTAAGATCATTGGACCTCAGTTTTAACAAATTAAGTGGACAGATTCCGAACACCTTGGGCGACCTGGAGAACATAAATATATTGTACTTAACTGGAAACCTTTTTACTGGACCGCTGCCAAATTGGATAGCAAGACCAGACTACACAGATCTTTCATATAACAACTTGAGCATTGAAAATCCAGAGCAGTTGACATGTCAACAGGGAAGCGTGAACTTGTTTGCATCATCTATGAGAGGAAGTAACTTGGGAATGGTTTCATGTTTGGGTAACATTGTCTGTCCTAAAACTTGGTACTCTCTCCATATAAATTGTGGTGGGAAGCTCATAACTTCAAATGAAAGCTTAATATATGATGATGATGGTGATTCAAATGAAGTTGGACCAGCAAGCTTTCACCGGACTGGATCGAATTGGGCACTTAGCAACACGGGTCACTTCTTTGACAGTGGCCTTGTGGACTACTATACTTGGTCTAATACAACTAAACTTGCGATGGAAAATGGAGAACTGTATATGGATGCACGTGTTTCTCCGCTTTCTCTAACATATTATGGATTTTGCTTAGGAAATGGAAACTACACGGTAAATCTGCATTTTGCAGAGATAATGTTCACTGATGATCAAACATATAACAACCTCGGAAGGCGTATATTTGACATCTATATTCAGAGAAGGTTGGCGCTGAAGGATTTCAATATTGCAAAAGAAGCAGGAGGAGTTGGTAAGGCTATTATAAAGAAGTTCAATGCTACTGTGACTAGTAATACGTTGGAAATTCGACTTCATTGGGCTGGGAAGGGGACAACTGCTATCCCATTTGGATCAGTATATGGTCCTCTTATATCGGCTATATCGGTTAATCCTGCAGACTTTACTCCCCCAGTGGAAAAGCAAAGTAGCATGCCTGTGTGGAATATTGTTGCAATTGTAGTTGCTGGAGCACTAGGTATCTTCATCGTATTTGGTATAGCTCGGTGGAGAGGATGTCGACGACAGATAGGTCCATTAGAAAGAGAGATAAAGGGTTTAGACCTCCACACTGGATTATTTACCTTAAGCCAAATCAAAGCAGCAACTAACAACTTTGATATTGCCAATAAGATCGGAGAAGGAGGGTTTGGTCCTGTTTACAAGGGTGTTCTTTCGGATGGCACCATTGTAGCAGTTAAGCAGCTTTCTTCTAAATCAAAGCAAGGAAATCGCGAGTTTATCAATGAGATTGGATTTATTTCTGCTTTGCAACATCCTTATCTAGTTAAGCTCTATGGTTGTTGTATGGAGGGAGATCAATTGTTGCTGATATATGAATACATGGAAAATAATAGCCTTGCTTGTGCTTTGTTTGCCAAAGAAAAAGGTCAATTGAAATTGGCTTGGTCAACAAGGATGAAAATTTGCATTGGTATTGCTAGAGGTTTGGCTTATCTTCATGAAGAGTCGAGGCTAAAGATAGTTCACAGGGACATCAAGGCCACTAATGTGTTACTGGATAAGGATCTCAATCCAAAGATATCTGATTTTGGTTTGGCGAAACTTAAAGATGACGGACACACCCACATAACCACTAGAGTAGCTGGAACTTATGGATATATGGCTCCGGAATATGCAATGCATGGTTATTTGACTGATAAAGCCGACGTTTATAGTTTTGGAGTTGTTGCCTTGGAAATTGTGAGTGGGAAGCACAACACCATGAACTGGCCAAAGGAAGAATGCTTCTCTCTTGTTGATTGGGTGCATCTCTTGAAGGAAGAAGGCAATATAATGGACCTAGTTGATGAAAGATTGAGTGAAGATTTCAAAAAAGAGGATGTAATGGTAATGATCAATGTGGCTCTTTTATGCACTCATGTTTCTCCAATGCATAGGCCAACCATGTCTTCAGTTGTAAGCATGCTTGAAGGAAAATCTGTTGTTCAAGAGGTGTTGCTTGACACAAGCCAGGTGTTTGAAGGCAAAAAGTTGGAGATGATTCAACAATATTATCAGAAAAGTGGAAAAAATGATACCCTTGAGACTCAAGAAGAGAGTATCTCAATAGAAGCAACTGAAGAATTTATGTCTGATACAGATCTACTTTCTACCAACATGGATTCTTCTTATAGAAGTTTTAACACTTTGTAA 3033 0.3927 MKITLPLLFHLLFLAFCLISSFASGATLLEEEAQVMKDIAKTLGKKDWNFSIDPCSGKNNWVSSVQVKGFENAVTCNCSFDNATVCHIVSIVLKSQNLSGTLPREFVRLPYLQEIDLTRNNLNGTIPPQWGSINLVNISLYGNRLTGQIPKELGKIITLKSLVLEFNQLSGKLPPELGNLHQLERLLLTSNNFTGNLPATFAKLTKLKHIRLGDNQFSGTIPDFIQSWTSLERLVVQGSGFSGPVPYGVSYLKNLTDLRISDLKGSDSPFPQLINLTNLETLVLRSCNLIGAVPEYLGNITNLRSLDLSFNKLSGQIPNTLGDLENINILYLTGNLFTGPLPNWIARPDYTDLSYNNLSIENPEQLTCQQGSVNLFASSMRGSNLGMVSCLGNIVCPKTWYSLHINCGGKLITSNESLIYDDDGDSNEVGPASFHRTGSNWALSNTGHFFDSGLVDYYTWSNTTKLAMENGELYMDARVSPLSLTYYGFCLGNGNYTVNLHFAEIMFTDDQTYNNLGRRIFDIYIQRRLALKDFNIAKEAGGVGKAIIKKFNATVTSNTLEIRLHWAGKGTTAIPFGSVYGPLISAISVNPADFTPPVEKQSSMPVWNIVAIVVAGALGIFIVFGIARWRGCRRQIGPLEREIKGLDLHTGLFTLSQIKAATNNFDIANKIGEGGFGPVYKGVLSDGTIVAVKQLSSKSKQGNREFINEIGFISALQHPYLVKLYGCCMEGDQLLLIYEYMENNSLACALFAKEKGQLKLAWSTRMKICIGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLKDDGHTHITTRVAGTYGYMAPEYAMHGYLTDKADVYSFGVVALEIVSGKHNTMNWPKEECFSLVDWVHLLKEEGNIMDLVDERLSEDFKKEDVMVMINVALLCTHVSPMHRPTMSSVVSMLEGKSVVQEVLLDTSQVFEGKKLEMIQQYYQKSGKNDTLETQEESISIEATEEFMSDTDLLSTNMDSSYRSFNTL 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01944 1010 Gene3D - 400 592 - -
Car01g01944 1010 Gene3D Ribonuclease Inhibitor 265 383 IPR032675 -
Car01g01944 1010 Gene3D Ribonuclease Inhibitor 191 264 IPR032675 -
Car01g01944 1010 Gene3D Phosphorylase Kinase; domain 1 639 740 - -
Car01g01944 1010 CDD STKc_IRAK 671 938 - -
Car01g01944 1010 SMART serkin_6 665 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01944 1010 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 380 982 - -
Car01g01944 1010 Pfam Protein tyrosine and serine/threonine kinase 667 936 IPR001245 GO:0004672|GO:0006468
Car01g01944 1010 SUPERFAMILY L domain-like 78 358 - -
Car01g01944 1010 ProSiteProfiles Leucine-rich repeat profile. 302 325 IPR001611 GO:0005515
Car01g01944 1010 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 289 347 - -
Car01g01944 1010 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 75 289 - -
Car01g01944 1010 Pfam Leucine rich repeat 277 336 IPR001611 GO:0005515
Car01g01944 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Car01g01944 1010 ProSiteProfiles Protein kinase domain profile. 665 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car01g01944 1010 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 380 982 - -
Car01g01944 1010 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 75 289 - -
Car01g01944 1010 Gene3D Transferase(Phosphotransferase) domain 1 741 951 - -
Car01g01944 1010 SUPERFAMILY Protein kinase-like (PK-like) 650 938 IPR011009 -
Car01g01944 1010 Pfam Malectin domain 402 587 IPR021720 -
Car01g01944 1010 Gene3D Ribonuclease Inhibitor 28 190 IPR032675 -
Car01g01944 1010 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 289 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01944 Car-Chr1 44136924 44149023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01944 19 970 Receptor kinase-like Gene Family AT1G53420 53.846 0.0 1002
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Car01g01944 PK_Tyr_Ser-Thr 1.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01944 - - gmx:100786496 1597.79