Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01938 ATGAAGATTCAGTGTAACGTGTGTGAAGCTGCAGAAGCTAAGGTTCTTTGTTGTGCTGATGAAGCTGCTTTGTGTTGTGAATGTGATGAGAAGGTTCATGCTGCTAATAAGCTTGCTGGAAAACATCAGAGAATTCCTCTTTCTACATCTTCTTCTCATATGCCTAAATGTGATATTTGTCAGGAAGCATTCGGCTATTTCTTTTGTCTTGAAGATCGAGCCTTACTCTGTCGAAAATGTGATTTAGCAATACACACTGCAAATGCATATGTCTCAGATCATCAAAGGTTTCTTCTCACTGGTGTAAAAGTAGGCCTCGAAACTACCGAGCCCGGTGCTTCCTCAAAGTCGGATTCTGTGGAGAAAGTTTCTGATACTAAATCTTCTTCTGTCTCAAGAAAGATTTCCACAATGCCTCAATCATCGGGTTACAATGAAATTCAAATGCTGCCTACTGAAGCTGCAGGAGCTGGGGAGTTTCCACCAGCCAAAGTCTCTTATGGTGGTGGTTCTACAGATGGAAACATGTCGCAGTGGACAATCGATGAATTTTTCGGCGTAAATGATTTCAGTCAGAGTTATAACTACATGGATGGATCATCAAGAGTATGTTCATAG 618 0.4126 MKIQCNVCEAAEAKVLCCADEAALCCECDEKVHAANKLAGKHQRIPLSTSSSHMPKCDICQEAFGYFFCLEDRALLCRKCDLAIHTANAYVSDHQRFLLTGVKVGLETTEPGASSKSDSVEKVSDTKSSSVSRKISTMPQSSGYNEIQMLPTEAAGAGEFPPAKVSYGGGSTDGNMSQWTIDEFFGVNDFSQSYNYMDGSSRVCS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01938 205 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 202 - -
Car01g01938 205 SMART bboxneu5 52 99 IPR000315 GO:0008270
Car01g01938 205 SMART bboxneu5 4 47 IPR000315 GO:0008270
Car01g01938 205 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Car01g01938 205 MobiDBLite consensus disorder prediction 110 138 - -
Car01g01938 205 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Car01g01938 205 Gene3D Classic Zinc Finger 1 93 - -
Car01g01938 205 CDD Bbox1_BBX-like 5 47 - -
Car01g01938 205 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 202 - -
Car01g01938 205 CDD Bbox1_BBX-like 56 99 - -
Car01g01938 205 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01938 Car-Chr1 44057851 44061159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01938 1 203 C2C2-CO-like Transcription Factor Family AT1G78600 56.075 5.83e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car01g01938 zf-B_box 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01938 - - gmx:100790959 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01938 01 44057851 44061159 Car01g01938 01 44057851 44061159 ECH