Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g01936 ATGGTTGGATTTCAGAGCGAGCATATGCCAGGGAACAAGTATAATGGTAATTATGGTAGTTCTCCAGGTCGTGTTGAACGACTTGTGAGAGTCAGAGAGCTAAGAAAAAGCAGCAAAGCATCATCTCTTTCGATTGAGTCACCTGATAGTGTTCTTCTTAGTAATAATAATAATGATAAACATGTGGTTTCTGAATCTTTTGAGCATGATCTACGCTTAAAAGAAAATAATGATTCTGTTGCTTCCTATGAACGATTCTTGGAAGGAGTTCCAGCAGCAGCAAAGGCTCTTACTGATGGATATGAAAGGGAAGATGGAAAACCGGCTAGACAGAGGCTTTTGGTGGTGGCTAATAGGCTGCCAGTTTCAGCTGTTAGGAAAGGGGAGGATTCTTGGTCTTTGGAGATAAGCGCTGGTGGCTTGGTGAGCGCTCTTTTAGGTGTGAAGGAGTTTGAAGCGAGGTGGATAGGTTGGGCCGGTGTTAATGTCGTGGATGAGGTTGGACAAAAGTCACTCACTGAAGCATTGGCTGAAAAGAGGTGTATCCCAGTATTTCTTACTGAAAAGATTGTTCATCAGTACTATAATGGCTATTGCAATAACATTTTGTGGCCCCTTTTTCATTACCTTGGACTTCCACAAGAAGACCGTCTAGCGACAACGCGTGGTTTCCAGTCTCAGTTTGATTCGTATCAGGAGGCAAATCAAATGTTTGCTGATGTGGTAAATAAGATCTATGAAGAGGGAGATATTGTTTGGTGCCATGATTACCATCTTATGTTTCTACCACAATGCTTAAAGAAATTTAACAAAAAAATGAAAGTTGGCTGGTTTCTGCATACCCCATTTCCATCTTCTGAAATTCACAGGACACTGCCATCTCGTTCCGAGCTCCTACGTGCTGTTCTTGCTGCTGATTTGGTTGGATTTCACACCTATGATTATGCACGGCACTTTGTTAGTGCATGTACTCGCATTCTTGGACTTGAGGCCACACCAGAAGGGGTTGAGACCCCACCAGAAGGGGCTGAGAATCAAGGGAAACTGACTCGAGTTGCTGCATTTCCAATTGGCATAGACTCAGATCGGTTCATACGTGCACTTGATCTTCCTAAAGTCCAAGGCCACATTAAAGACTTACAAGACAGATTTAAAGGCAGAAAGGTAATGTTAGGTGTTGATCGCCTTGATATGATTAAAGGAATTCCTCAAAAACTTCTAGCTTTTGAAAAGTTTTTGGAAGAGAACGATGGTTGGCGAGATAAAGTTGTTCTGCTTCAAATTGCTGTGCCAACAAGAACAGATGTTCCCGAATATCAAAAGCTTACAAGCCAGGTTCATGAAATTGTTGGTCGCATCAATGGCAGATTTGGATCCCTGACTGCTGTTCCTATACATCACCTGGACCGCACTCTTGACTTTCAAGCATTATGTGCTTTGTACGCTGTTACAGATGTAGCACTTGTCACGTCTTTGAGGGATGGAATGAATCTTGTCAGTTACGAGTTTGTGGCCTGCCAAGAAAAGAAGAAGGGGGTTCTCATTCTTAGTGAATTTGCTGGTGCTGCACAGTCCCTTGGTGCTGGGGCACTTCTTGTCAACCCCTGGAACATCACAGAAGTTGCTAAAGCAATTTCCAAGGCTCTGAACATGAAATCTCCAGAGAGAGAGAAGCGACACAGACACAACTTTCATCATGTAACAACCCACACTGCTCAGGAATGGGCAGAAACTTTTGTCAGCGAATTAAATGATACTGTTGTTGAGGCACAGCTAAGGACAAAACAAACTCCACCACGACTCAAAACCAATATTGCAATTCAACAATATCTGAAGTCAACCAATCGATTGCTTATTTTGGGATTCAATGGAACATTAACTGAACCAGTTGAGAGAAGAGGTGATCAATATAAAGAAATGGAACTCACAGTGCACCCAGAACTGAAACAATCCTTCACACAACTTTGCAGTGACCCAAAGACTACAGTTGTTGTGCTTAGTGGAAGTGGGAGAACCCTTCTAGATGAAAACTTTAGAGAATACAACACTTGGCTGGCAGCGGAGAATGGGATGTTTTTAAACCCTTCAAATGGAGAATGGATGACAACAATGCCGGAACAACTGAATATGGAATGGGTTGACAGCGTGAAGCATGTTTTTGAGTACTTCACCGAAAGAACACCTCAGTCACATTTCGAAGAAAGGGAAGCTTCACTTGTATGGAATTACAGACATGCAGATGTTGAGTTTGGAAAACTTCAAGCAAGGGACATGCTGCAACATCTCTGCACAGGTCCAATTTCAAATGCATCAGTCGAAGTTGTTCAAGGAAGCCGATCGGTTGAGGTGCGAGCTGCTGGTGTTACAAAGGGAGCAGCCATTGACCGCATCCTGGGGGAGATAGTTCACAGTAAATCCATGACAACCCCAATTGATTATGTTCTATGTATTGGACATTTTCTGGCAAAGCAGGATGAAGATATTTATGACTTTTTTGAACCAGAGCCTTCTTGTTTTGGTGCGAGTCTTCAACGAAGCAAGTTAACAGATGCAGCAAAGTTTCCTAGTGAGAAGGTATCATCTTTGAAGATCCCAGCAATTAAAAATGGATTAAAGTCGACAAATCAAAACAAGGGACAGCGACCTCTCTCAAATTCGGAGAAGAAAACAACTAATCATTTCAACCACGCACCGAGGAAACCAGCCCCTGAAAAGATCTCTTGGAATGTCCTTGATCTCAAGAAGAAGAATTACTTCTCATGTGCTGTTGGGAGAACTCAAACAAACGCTGGCTACACGCTTCGATCTTCTGATGAGGTTGTTGATTTTCTGAAGGAACTTGCTTATGCATCTTCTCTTAATAACTGA 2868 0.4254 MVGFQSEHMPGNKYNGNYGSSPGRVERLVRVRELRKSSKASSLSIESPDSVLLSNNNNDKHVVSESFEHDLRLKENNDSVASYERFLEGVPAAAKALTDGYEREDGKPARQRLLVVANRLPVSAVRKGEDSWSLEISAGGLVSALLGVKEFEARWIGWAGVNVVDEVGQKSLTEALAEKRCIPVFLTEKIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRGFQSQFDSYQEANQMFADVVNKIYEEGDIVWCHDYHLMFLPQCLKKFNKKMKVGWFLHTPFPSSEIHRTLPSRSELLRAVLAADLVGFHTYDYARHFVSACTRILGLEATPEGVETPPEGAENQGKLTRVAAFPIGIDSDRFIRALDLPKVQGHIKDLQDRFKGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENDGWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGSLTAVPIHHLDRTLDFQALCALYAVTDVALVTSLRDGMNLVSYEFVACQEKKKGVLILSEFAGAAQSLGAGALLVNPWNITEVAKAISKALNMKSPEREKRHRHNFHHVTTHTAQEWAETFVSELNDTVVEAQLRTKQTPPRLKTNIAIQQYLKSTNRLLILGFNGTLTEPVERRGDQYKEMELTVHPELKQSFTQLCSDPKTTVVVLSGSGRTLLDENFREYNTWLAAENGMFLNPSNGEWMTTMPEQLNMEWVDSVKHVFEYFTERTPQSHFEEREASLVWNYRHADVEFGKLQARDMLQHLCTGPISNASVEVVQGSRSVEVRAAGVTKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLAKQDEDIYDFFEPEPSCFGASLQRSKLTDAAKFPSEKVSSLKIPAIKNGLKSTNQNKGQRPLSNSEKKTTNHFNHAPRKPAPEKISWNVLDLKKKNYFSCAVGRTQTNAGYTLRSSDEVVDFLKELAYASSLNN 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g01936 955 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 111 587 - -
Car01g01936 955 TIGRFAM T6PP: trehalose-phosphatase 615 830 IPR003337 GO:0003824|GO:0005992
Car01g01936 955 Pfam Glycosyltransferase family 20 112 584 IPR001830 GO:0003824|GO:0005992
Car01g01936 955 Gene3D - 706 786 - -
Car01g01936 955 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 112 584 IPR012766 GO:0003825|GO:0005992
Car01g01936 955 MobiDBLite consensus disorder prediction 870 902 - -
Car01g01936 955 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 45 948 - -
Car01g01936 955 CDD HAD_TPP 617 835 - -
Car01g01936 955 CDD GT20_TPS 112 584 IPR001830 GO:0003824|GO:0005992
Car01g01936 955 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 45 948 IPR001830 GO:0003824|GO:0005992
Car01g01936 955 Gene3D Glycogen Phosphorylase B; 104 365 - -
Car01g01936 955 Gene3D - 619 800 IPR023214 -
Car01g01936 955 Gene3D Glycogen Phosphorylase B; 366 568 - -
Car01g01936 955 SUPERFAMILY HAD-like 616 948 IPR036412 -
Car01g01936 955 MobiDBLite consensus disorder prediction 870 891 - -
Car01g01936 955 MobiDBLite consensus disorder prediction 1 22 - -
Car01g01936 955 Pfam Trehalose-phosphatase 622 840 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g01936 Car-Chr1 43993709 44002389 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g01936 9 952 Trehalose Biosynthesis Gene Families AT1G78580 73.465 0.0 1404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g01936 K16055 - gmx:100789554 1509.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g01936 01 43993709 44002389 Car01g01936 01 43993709 44002389 ECH